Analysis of interatomic Contacts of Structural Units in PDB entry:
3O6V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3O6V entry

There are 2 chains in PDB entry 3O6V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 8LYS 258
B
 LYS 8LEU 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 3O6V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 21Right-handed 310
Helix 2
2
A
31 33Right-handed 310
Helix 3
3
A
34 40Right-handed alpha
Helix 4
4
A
74 88Right-handed alpha
Helix 5
5
A
122 127Right-handed 310
Helix 6
6
A
137 151Right-handed alpha
Helix 7
7
A
167 171Right-handed 310
Helix 8
8
A
181 185Right-handed 310
Helix 9
9
A
186 194Right-handed alpha
Helix 10
10
A
202 212Right-handed alpha
Helix 11
11
A
234 257Right-handed alpha
Helix 12
12
B
17 21Right-handed 310
Helix 13
13
B
31 33Right-handed 310
Helix 14
14
B
34 40Right-handed alpha
Helix 15
15
B
74 88Right-handed alpha
Helix 16
16
B
122 127Right-handed 310
Helix 17
17
B
137 151Right-handed alpha
Helix 18
18
B
167 171Right-handed 310
Helix 19
19
B
181 185Right-handed 310
Helix 20
20
B
186 194Right-handed alpha
Helix 21
21
B
202 212Right-handed alpha
Helix 22
22
B
234 257Right-handed alpha
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There are 2 sheets in PDB entry 3O6V. Click on sheet of interest to get list of strands forming it: A, B,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
43 51first strand
Strand 2
A
54 61anti-parallel
Strand 3
A
64 69anti-parallel
Strand 4
A
25 29parallel
Strand 5
A
92 101parallel
Strand 6
A
216 226parallel
Strand 7
A
111 120anti-parallel
Strand 8
A
155 163parallel
Strand 9
A
198 200parallel
Strand 10
A
92 101anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
43 51first strand
Strand 2
B
54 61anti-parallel
Strand 3
B
64 69anti-parallel
Strand 4
B
25 28parallel
Strand 5
B
92 101parallel
Strand 6
B
216 226parallel
Strand 7
B
111 120anti-parallel
Strand 8
B
155 163parallel
Strand 9
B
198 200parallel
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