Analysis of interatomic Contacts of Structural Units in PDB entry:
3O8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3O8L entry

There are 2 chains in PDB entry 3O8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 9GLU 756
B
 ALA 9GLU 756
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 3O8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 44Right-handed alpha
Helix 2
2
A
53 60Right-handed alpha
Helix 3
3
A
61 65Right-handed 310
Helix 4
4
A
70 74Right-handed 310
Helix 5
5
A
90 93Right-handed 310
Helix 6
6
A
94 109Right-handed alpha
Helix 7
7
A
118 131Right-handed alpha
Helix 8
8
A
132 139Right-handed alpha
Helix 9
9
A
148 152Right-handed 310
Helix 10
10
A
177 194Right-handed alpha
Helix 11
11
A
213 224Right-handed alpha
Helix 12
12
A
239 253Right-handed alpha
Helix 13
13
A
275 287Right-handed alpha
Helix 14
14
A
306 326Right-handed alpha
Helix 15
15
A
348 364Right-handed alpha
Helix 16
16
A
366 375Right-handed alpha
Helix 17
17
A
376 390Right-handed alpha
Helix 18
18
A
414 429Right-handed alpha
Helix 19
19
A
440 446Right-handed alpha
Helix 20
20
A
474 476Right-handed 310
Helix 21
21
A
477 488Right-handed alpha
Helix 22
22
A
498 515Right-handed alpha
Helix 23
23
A
541 557Right-handed alpha
Helix 24
24
A
578 588Right-handed alpha
Helix 25
25
A
601 617Right-handed alpha
Helix 26
26
A
636 648Right-handed alpha
Helix 27
27
A
669 693Right-handed alpha
Helix 28
28
A
723 727Right-handed alpha
Helix 29
29
A
740 744Right-handed 310
Helix 30
30
A
745 752Right-handed alpha
Helix 31
31
B
29 44Right-handed alpha
Helix 32
32
B
54 60Right-handed alpha
Helix 33
33
B
69 74Right-handed 310
Helix 34
34
B
94 109Right-handed alpha
Helix 35
35
B
118 130Right-handed alpha
Helix 36
36
B
131 136Right-handed alpha
Helix 37
37
B
177 194Right-handed alpha
Helix 38
38
B
213 222Right-handed alpha
Helix 39
39
B
238 253Right-handed alpha
Helix 40
40
B
275 287Right-handed alpha
Helix 41
41
B
297 302Right-handed 310
Helix 42
42
B
306 327Right-handed alpha
Helix 43
43
B
347 364Right-handed alpha
Helix 44
44
B
366 375Right-handed alpha
Helix 45
45
B
375 390Right-handed alpha
Helix 46
46
B
414 429Right-handed alpha
Helix 47
47
B
440 445Right-handed alpha
Helix 48
48
B
452 457Right-handed alpha
Helix 49
49
B
458 462Right-handed 310
Helix 50
50
B
474 476Right-handed 310
Helix 51
51
B
477 488Right-handed alpha
Helix 52
52
B
498 512Right-handed alpha
Helix 53
53
B
541 559Right-handed alpha
Helix 54
54
B
578 588Right-handed alpha
Helix 55
55
B
601 617Right-handed alpha
Helix 56
56
B
636 648Right-handed alpha
Helix 57
57
B
669 694Right-handed alpha
Helix 58
58
B
723 727Right-handed alpha
Helix 59
59
B
740 744Right-handed 310
Helix 60
60
B
745 752Right-handed alpha
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There are 12 sheets in PDB entry 3O8L. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
17 21parallel
Strand 3
A
112 117parallel
Strand 4
A
157 162parallel
Strand 5
A
334 339parallel
Strand 6
A
342 347anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
202 207parallel
Strand 3
A
291 294parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 450first strand
Strand 2
A
432 436anti-parallel
Strand 3
A
402 408parallel
Strand 4
A
493 497parallel
Strand 5
A
522 526parallel
Strand 6
A
708 714parallel
Strand 7
A
717 722anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
592 594first strand
Strand 2
A
622 628parallel
Strand 3
A
566 572parallel
Strand 4
A
653 658parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
730 731first strand
Strand 2
A
736 737anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
47 49first strand
Strand 2
B
17 22parallel
Strand 3
B
112 117parallel
Strand 4
B
157 162parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 263first strand
Strand 2
B
203 207parallel
Strand 3
B
294 295parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
337 339first strand
Strand 2
B
342 344anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
448 451first strand
Strand 2
B
432 436anti-parallel
Strand 3
B
402 408parallel
Strand 4
B
494 497parallel
Strand 5
B
523 526parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
592 594first strand
Strand 2
B
622 628parallel
Strand 3
B
566 572parallel
Strand 4
B
653 655parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
709 714first strand
Strand 2
B
717 722anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
730 731first strand
Strand 2
B
736 737anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il