Analysis of interatomic Contacts of Structural Units in PDB entry:
3O8N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3O8N entry

There are 2 chains in PDB entry 3O8N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 9GLU 756
B
 ALA 9GLU 756
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 3O8N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 44Right-handed alpha
Helix 2
2
A
53 60Right-handed alpha
Helix 3
3
A
61 65Right-handed 310
Helix 4
4
A
70 74Right-handed 310
Helix 5
5
A
90 93Right-handed 310
Helix 6
6
A
94 107Right-handed alpha
Helix 7
7
A
118 130Right-handed alpha
Helix 8
8
A
132 140Right-handed alpha
Helix 9
9
A
146 151Right-handed alpha
Helix 10
10
A
178 195Right-handed alpha
Helix 11
11
A
213 224Right-handed alpha
Helix 12
12
A
239 253Right-handed alpha
Helix 13
13
A
275 287Right-handed alpha
Helix 14
14
A
306 326Right-handed alpha
Helix 15
15
A
348 356Right-handed alpha
Helix 16
16
A
356 364Right-handed alpha
Helix 17
17
A
366 375Right-handed alpha
Helix 18
18
A
375 390Right-handed alpha
Helix 19
19
A
414 429Right-handed alpha
Helix 20
20
A
440 446Right-handed alpha
Helix 21
21
A
474 476Right-handed 310
Helix 22
22
A
477 488Right-handed alpha
Helix 23
23
A
498 515Right-handed alpha
Helix 24
24
A
541 558Right-handed alpha
Helix 25
25
A
578 588Right-handed alpha
Helix 26
26
A
601 618Right-handed alpha
Helix 27
27
A
636 648Right-handed alpha
Helix 28
28
A
669 694Right-handed alpha
Helix 29
29
A
723 727Right-handed alpha
Helix 30
30
A
740 744Right-handed 310
Helix 31
31
A
745 752Right-handed alpha
Helix 32
32
B
29 44Right-handed alpha
Helix 33
33
B
54 59Right-handed alpha
Helix 34
34
B
97 109Right-handed alpha
Helix 35
35
B
118 136Right-handed alpha
Helix 36
36
B
177 195Right-handed alpha
Helix 37
37
B
213 223Right-handed alpha
Helix 38
38
B
238 252Right-handed alpha
Helix 39
39
B
275 287Right-handed alpha
Helix 40
40
B
306 327Right-handed alpha
Helix 41
41
B
348 364Right-handed alpha
Helix 42
42
B
366 375Right-handed alpha
Helix 43
43
B
376 390Right-handed alpha
Helix 44
44
B
414 430Right-handed alpha
Helix 45
45
B
440 446Right-handed alpha
Helix 46
46
B
452 457Right-handed 310
Helix 47
47
B
458 462Right-handed 310
Helix 48
48
B
474 476Right-handed 310
Helix 49
49
B
477 488Right-handed alpha
Helix 50
50
B
498 515Right-handed alpha
Helix 51
51
B
541 552Right-handed alpha
Helix 52
52
B
578 587Right-handed alpha
Helix 53
53
B
601 617Right-handed alpha
Helix 54
54
B
636 648Right-handed alpha
Helix 55
55
B
669 694Right-handed alpha
Helix 56
56
B
704 706Right-handed 310
Helix 57
57
B
723 727Right-handed alpha
Helix 58
58
B
728 730Right-handed 310
Helix 59
59
B
740 744Right-handed 310
Helix 60
60
B
745 752Right-handed alpha
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There are 14 sheets in PDB entry 3O8N. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
17 19parallel
Strand 3
A
112 114parallel
Strand 4
A
157 159parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 164first strand
Strand 2
A
176 177parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 203first strand
Strand 2
A
257 259parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
262 263parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 339first strand
Strand 2
A
342 347anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 450first strand
Strand 2
A
432 436anti-parallel
Strand 3
A
402 408parallel
Strand 4
A
493 497parallel
Strand 5
A
522 526parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
592 594first strand
Strand 2
A
622 628parallel
Strand 3
A
566 572parallel
Strand 4
A
653 658parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
709 714first strand
Strand 2
A
717 722anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
730 731first strand
Strand 2
A
736 737anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 67first strand
Strand 2
B
47 51anti-parallel
Strand 3
B
17 22parallel
Strand 4
B
112 117parallel
Strand 5
B
157 162parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
202 207first strand
Strand 2
B
258 263parallel
Strand 3
B
227 229parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
334 336first strand
Strand 2
B
345 347anti-parallel
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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
448 451first strand
Strand 2
B
432 436anti-parallel
Strand 3
B
402 408parallel
Strand 4
B
492 497parallel
Strand 5
B
522 526parallel
Strand 6
B
708 714parallel
Strand 7
B
717 722anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
592 594first strand
Strand 2
B
622 627parallel
Strand 3
B
566 570parallel
Strand 4
B
653 657parallel
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