Analysis of interatomic Contacts of Structural Units in PDB entry:
3OA8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OA8 entry

There are 9 chains in PDB entry 3OA8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 46ASP 235
A
 TYR 237LYS 274
B
 SER 29LYS 208
C
 ALA 46ASP 235
C
 TYR 237LYS 274
D
 SER 29LYS 208
E
 ALA 46ASP 235
E
 TYR 237LYS 274
F
 SER 29LYS 208
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 64 helices in PDB entry 3OA8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
48 61Right-handed alpha
Helix 2
2
A
86 90Right-handed 310
Helix 3
3
A
102 114Right-handed alpha
Helix 4
4
A
119 125Right-handed alpha
Helix 5
5
A
134 146Right-handed alpha
Helix 6
6
A
158 174Right-handed alpha
Helix 7
7
A
182 188Right-handed alpha
Helix 8
8
A
206 214Right-handed alpha
Helix 9
9
A
222 224Right-handed 310
Helix 10
10
A
228 240Right-handed alpha
Helix 11
11
A
249 263Right-handed alpha
Helix 12
12
B
34 44Right-handed alpha
Helix 13
13
B
58 67Right-handed alpha
Helix 14
14
B
72 85Right-handed alpha
Helix 15
15
B
97 107Right-handed alpha
Helix 16
16
B
124 128Right-handed 310
Helix 17
17
B
147 152Right-handed alpha
Helix 18
18
B
155 168Right-handed alpha
Helix 19
19
B
169 172Right-handed 310
Helix 20
20
B
188 201Right-handed alpha
Helix 21
21
B
204 208Right-handed 310
Helix 22
22
C
48 62Right-handed alpha
Helix 23
23
C
86 90Right-handed 310
Helix 24
24
C
102 114Right-handed alpha
Helix 25
25
C
119 125Right-handed alpha
Helix 26
26
C
134 146Right-handed alpha
Helix 27
27
C
158 174Right-handed alpha
Helix 28
28
C
182 188Right-handed alpha
Helix 29
29
C
206 214Right-handed alpha
Helix 30
30
C
228 240Right-handed alpha
Helix 31
31
C
249 263Right-handed alpha
Helix 32
32
D
35 44Right-handed alpha
Helix 33
33
D
51 56Right-handed alpha
Helix 34
34
D
58 67Right-handed alpha
Helix 35
35
D
72 85Right-handed alpha
Helix 36
36
D
97 107Right-handed alpha
Helix 37
37
D
124 128Right-handed 310
Helix 38
38
D
149 153Right-handed 310
Helix 39
39
D
155 168Right-handed alpha
Helix 40
40
D
169 172Right-handed 310
Helix 41
41
D
188 201Right-handed alpha
Helix 42
42
D
204 208Right-handed 310
Helix 43
43
E
48 61Right-handed alpha
Helix 44
44
E
86 90Right-handed 310
Helix 45
45
E
102 114Right-handed alpha
Helix 46
46
E
119 125Right-handed alpha
Helix 47
47
E
134 146Right-handed alpha
Helix 48
48
E
158 174Right-handed alpha
Helix 49
49
E
182 188Right-handed alpha
Helix 50
50
E
206 214Right-handed alpha
Helix 51
51
E
222 224Right-handed 310
Helix 52
52
E
228 240Right-handed alpha
Helix 53
53
E
249 263Right-handed alpha
Helix 54
54
F
32 44Right-handed alpha
Helix 55
55
F
51 56Right-handed 310
Helix 56
56
F
58 67Right-handed alpha
Helix 57
57
F
72 85Right-handed alpha
Helix 58
58
F
97 107Right-handed alpha
Helix 59
59
F
124 129Right-handed alpha
Helix 60
60
F
147 152Right-handed alpha
Helix 61
61
F
155 168Right-handed alpha
Helix 62
62
F
169 172Right-handed 310
Helix 63
63
F
188 201Right-handed alpha
Helix 64
64
F
204 208Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 3OA8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 94first strand
Strand 2
A
99 101anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
193 194first strand
Strand 2
A
197 198anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 227first strand
Strand 2
A
218 220anti-parallel
Strand 3
A
272 274parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 93first strand
Strand 2
C
100 101anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
193 194first strand
Strand 2
C
197 198anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
225 227first strand
Strand 2
C
218 220anti-parallel
Strand 3
C
272 274parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
92 93first strand
Strand 2
E
100 101anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
193 194first strand
Strand 2
E
197 198anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
225 227first strand
Strand 2
E
218 220anti-parallel
Strand 3
E
272 274parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il