Analysis of interatomic Contacts of Structural Units in PDB entry:
3OAJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OAJ entry

There are 2 chains in PDB entry 3OAJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3LEU 312
B
 ALA 3LEU 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 3OAJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 27Right-handed alpha
Helix 2
2
A
91 102Right-handed alpha
Helix 3
3
A
163 174Right-handed alpha
Helix 4
4
A
225 239Right-handed alpha
Helix 5
5
A
290 295Right-handed 310
Helix 6
6
A
296 304Right-handed alpha
Helix 7
7
B
18 27Right-handed alpha
Helix 8
8
B
91 102Right-handed alpha
Helix 9
9
B
163 174Right-handed alpha
Helix 10
10
B
225 239Right-handed alpha
Helix 11
11
B
290 295Right-handed 310
Helix 12
12
B
296 303Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3OAJ. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 39first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
61 66anti-parallel
Strand 4
A
9 16parallel
Strand 5
A
215 223anti-parallel
Strand 6
A
264 269parallel
Strand 7
A
253 258anti-parallel
Strand 8
A
247 248anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 111first strand
Strand 2
A
114 120anti-parallel
Strand 3
A
126 131anti-parallel
Strand 4
A
79 87parallel
Strand 5
A
153 160anti-parallel
Strand 6
A
198 202parallel
Strand 7
A
186 190anti-parallel
Strand 8
A
178 183anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 39first strand
Strand 2
B
47 52anti-parallel
Strand 3
B
61 66anti-parallel
Strand 4
B
9 16parallel
Strand 5
B
215 223anti-parallel
Strand 6
B
264 269parallel
Strand 7
B
253 258anti-parallel
Strand 8
B
247 248anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 111first strand
Strand 2
B
114 120anti-parallel
Strand 3
B
126 131anti-parallel
Strand 4
B
79 87parallel
Strand 5
B
153 160anti-parallel
Strand 6
B
198 202parallel
Strand 7
B
186 190anti-parallel
Strand 8
B
178 183anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il