Analysis of interatomic Contacts of Structural Units in PDB entry:
3OC7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OC7 entry

There is 1 chain in PDB entry 3OC7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1THR 262
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 3OC7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 14Right-handed alpha
Helix 2
2
A
24 28Right-handed 310
Helix 3
3
A
32 49Right-handed alpha
Helix 4
4
A
81 103Right-handed alpha
Helix 5
5
A
118 126Right-handed alpha
Helix 6
6
A
140 145Right-handed 310
Helix 7
7
A
151 156Right-handed alpha
Helix 8
8
A
160 171Right-handed alpha
Helix 9
9
A
175 182Right-handed alpha
Helix 10
10
A
191 205Right-handed alpha
Helix 11
11
A
207 242Right-handed alpha
Helix 12
12
A
243 256Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3OC7. Click on sheet of interest to get list of strands forming it: A, B,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
17 22anti-parallel
Strand 3
A
54 59parallel
Strand 4
A
107 111parallel
Strand 5
A
128 131parallel
Strand 6
A
187 188parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
114 115parallel
Strand 3
A
136 137parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il