Analysis of interatomic Contacts of Structural Units in PDB entry:
3OCF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OCF entry

There are 4 chains in PDB entry 3OCF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 2ARG 456
B
 MET 1SER 440
C
 THR 2LEU 455
D
 SER 0PHE 31
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 3OCF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 31Right-handed alpha
Helix 2
2
A
37 40Right-handed 310
Helix 3
3
A
41 62Right-handed alpha
Helix 4
4
A
66 82Right-handed alpha
Helix 5
5
A
85 89Right-handed 310
Helix 6
6
A
99 118Right-handed alpha
Helix 7
7
A
139 155Right-handed alpha
Helix 8
8
A
155 177Right-handed alpha
Helix 9
9
A
196 220Right-handed alpha
Helix 10
10
A
240 254Right-handed alpha
Helix 11
11
A
262 267Right-handed alpha
Helix 12
12
A
270 298Right-handed alpha
Helix 13
13
A
326 352Right-handed alpha
Helix 14
14
A
360 386Right-handed alpha
Helix 15
15
A
387 390Right-handed 310
Helix 16
16
A
393 403Right-handed alpha
Helix 17
17
A
404 410Right-handed 310
Helix 18
18
A
411 431Right-handed alpha
Helix 19
19
A
433 441Right-handed alpha
Helix 20
20
A
445 452Right-handed alpha
Helix 21
21
B
21 31Right-handed alpha
Helix 22
22
B
37 40Right-handed 310
Helix 23
23
B
41 62Right-handed alpha
Helix 24
24
B
66 82Right-handed alpha
Helix 25
25
B
85 89Right-handed 310
Helix 26
26
B
99 118Right-handed alpha
Helix 27
27
B
139 155Right-handed alpha
Helix 28
28
B
155 177Right-handed alpha
Helix 29
29
B
196 220Right-handed alpha
Helix 30
30
B
239 254Right-handed alpha
Helix 31
31
B
262 267Right-handed alpha
Helix 32
32
B
270 298Right-handed alpha
Helix 33
33
B
326 352Right-handed alpha
Helix 34
34
B
360 386Right-handed alpha
Helix 35
35
B
387 390Right-handed 310
Helix 36
36
B
393 403Right-handed alpha
Helix 37
37
B
404 410Right-handed 310
Helix 38
38
B
411 416Right-handed alpha
Helix 39
39
B
416 429Right-handed alpha
Helix 40
40
B
433 439Right-handed alpha
Helix 41
41
C
21 31Right-handed alpha
Helix 42
42
C
37 40Right-handed 310
Helix 43
43
C
41 62Right-handed alpha
Helix 44
44
C
66 82Right-handed alpha
Helix 45
45
C
85 89Right-handed 310
Helix 46
46
C
99 118Right-handed alpha
Helix 47
47
C
139 177Right-handed alpha
Helix 48
48
C
196 220Right-handed alpha
Helix 49
49
C
240 254Right-handed alpha
Helix 50
50
C
262 269Right-handed alpha
Helix 51
51
C
270 298Right-handed alpha
Helix 52
52
C
326 352Right-handed alpha
Helix 53
53
C
360 386Right-handed alpha
Helix 54
54
C
387 390Right-handed 310
Helix 55
55
C
393 403Right-handed alpha
Helix 56
56
C
404 410Right-handed 310
Helix 57
57
C
411 416Right-handed alpha
Helix 58
58
C
416 431Right-handed alpha
Helix 59
59
C
433 441Right-handed alpha
Helix 60
60
C
445 452Right-handed alpha
Helix 61
61
D
21 31Right-handed alpha
Helix 62
62
D
37 40Right-handed 310
Helix 63
63
D
41 63Right-handed alpha
Helix 64
64
D
66 82Right-handed alpha
Helix 65
65
D
85 89Right-handed 310
Helix 66
66
D
99 118Right-handed alpha
Helix 67
67
D
139 177Right-handed alpha
Helix 68
68
D
196 220Right-handed alpha
Helix 69
69
D
239 254Right-handed alpha
Helix 70
70
D
262 267Right-handed alpha
Helix 71
71
D
270 298Right-handed alpha
Helix 72
72
D
326 352Right-handed alpha
Helix 73
73
D
360 386Right-handed alpha
Helix 74
74
D
387 390Right-handed 310
Helix 75
75
D
393 403Right-handed alpha
Helix 76
76
D
404 412Right-handed 310
Helix 77
77
D
419 431Right-handed alpha
Helix 78
78
D
433 440Right-handed alpha
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There are 16 sheets in PDB entry 3OCF. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
10 14anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 186first strand
Strand 2
A
189 195anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 224first strand
Strand 2
A
258 259parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 309first strand
Strand 2
A
391 392anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 7first strand
Strand 2
B
10 15anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 186first strand
Strand 2
B
189 195anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 224first strand
Strand 2
B
258 259parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
308 309first strand
Strand 2
B
391 392anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 7first strand
Strand 2
C
10 14anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
181 186first strand
Strand 2
C
189 195anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
223 224first strand
Strand 2
C
258 259parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
308 309first strand
Strand 2
C
391 392anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 7first strand
Strand 2
D
10 15anti-parallel
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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
181 186first strand
Strand 2
D
189 195anti-parallel
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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
223 224first strand
Strand 2
D
258 259parallel
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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
308 309first strand
Strand 2
D
391 392anti-parallel
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