Analysis of interatomic Contacts of Structural Units in PDB entry:
3OCJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OCJ entry

There is 1 chain in PDB entry 3OCJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 0ALA 302
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 3OCJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 31Right-handed alpha
Helix 2
2
A
37 51Right-handed alpha
Helix 3
3
A
51 61Right-handed alpha
Helix 4
4
A
64 74Right-handed alpha
Helix 5
5
A
82 92Right-handed alpha
Helix 6
6
A
92 113Right-handed alpha
Helix 7
7
A
127 132Right-handed alpha
Helix 8
8
A
149 161Right-handed alpha
Helix 9
9
A
165 167Right-handed 310
Helix 10
10
A
175 179Right-handed 310
Helix 11
11
A
193 197Right-handed 310
Helix 12
12
A
199 213Right-handed alpha
Helix 13
13
A
238 242Right-handed 310
Helix 14
14
A
243 257Right-handed alpha
Helix 15
15
A
267 278Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3OCJ.

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 173first strand
Strand 2
A
142 147parallel
Strand 3
A
118 121parallel
Strand 4
A
185 189parallel
Strand 5
A
214 223parallel
Strand 6
A
295 299anti-parallel
Strand 7
A
281 286anti-parallel
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