Analysis of interatomic Contacts of Structural Units in PDB entry:
3OCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OCM entry

There are 2 chains in PDB entry 3OCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 314PRO 462
B
 PHE 315GLU 460
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 19 helices in PDB entry 3OCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
316 327Right-handed alpha
Helix 2
2
A
328 332Right-handed 310
Helix 3
3
A
342 344Right-handed 310
Helix 4
4
A
352 363Right-handed alpha
Helix 5
5
A
384 395Right-handed alpha
Helix 6
6
A
398 402Right-handed 310
Helix 7
7
A
409 412Right-handed 310
Helix 8
8
A
413 424Right-handed alpha
Helix 9
9
A
443 453Right-handed alpha
Helix 10
10
B
316 327Right-handed alpha
Helix 11
11
B
328 332Right-handed 310
Helix 12
12
B
333 338Right-handed alpha
Helix 13
13
B
342 344Right-handed 310
Helix 14
14
B
352 363Right-handed alpha
Helix 15
15
B
384 395Right-handed alpha
Helix 16
16
B
398 402Right-handed 310
Helix 17
17
B
409 412Right-handed 310
Helix 18
18
B
413 425Right-handed alpha
Helix 19
19
B
443 453Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3OCM. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 340first strand
Strand 2
A
438 442anti-parallel
Strand 3
A
429 432anti-parallel
Strand 4
A
407 408parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 348first strand
Strand 2
A
367 371parallel
Strand 3
A
378 383anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 340first strand
Strand 2
B
438 442anti-parallel
Strand 3
B
429 432anti-parallel
Strand 4
B
407 408parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 348first strand
Strand 2
B
367 371parallel
Strand 3
B
378 383anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il