Analysis of interatomic Contacts of Structural Units in PDB entry:
3OD1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OD1 entry

There are 2 chains in PDB entry 3OD1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 3ALA 390
B
 MSE 1GLY 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 3OD1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 38Right-handed alpha
Helix 2
2
A
53 58Right-handed alpha
Helix 3
3
A
61 65Right-handed 310
Helix 4
4
A
82 94Right-handed alpha
Helix 5
5
A
135 153Right-handed alpha
Helix 6
6
A
165 177Right-handed alpha
Helix 7
7
A
178 191Right-handed alpha
Helix 8
8
A
193 204Right-handed alpha
Helix 9
9
A
207 217Right-handed alpha
Helix 10
10
A
223 232Right-handed alpha
Helix 11
11
A
236 256Right-handed alpha
Helix 12
12
A
258 260Right-handed 310
Helix 13
13
A
299 304Right-handed alpha
Helix 14
14
A
317 325Right-handed alpha
Helix 15
15
A
344 357Right-handed alpha
Helix 16
16
A
368 370Right-handed 310
Helix 17
17
A
372 378Right-handed alpha
Helix 18
18
B
17 38Right-handed alpha
Helix 19
19
B
53 58Right-handed alpha
Helix 20
20
B
61 65Right-handed 310
Helix 21
21
B
82 92Right-handed alpha
Helix 22
22
B
135 153Right-handed alpha
Helix 23
23
B
165 177Right-handed alpha
Helix 24
24
B
178 191Right-handed alpha
Helix 25
25
B
193 204Right-handed alpha
Helix 26
26
B
207 218Right-handed alpha
Helix 27
27
B
224 232Right-handed alpha
Helix 28
28
B
236 256Right-handed alpha
Helix 29
29
B
258 260Right-handed 310
Helix 30
30
B
299 304Right-handed alpha
Helix 31
31
B
317 325Right-handed alpha
Helix 32
32
B
344 357Right-handed alpha
Helix 33
33
B
368 370Right-handed 310
Helix 34
34
B
372 379Right-handed alpha
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There are 6 sheets in PDB entry 3OD1. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
101 110parallel
Strand 3
A
122 131anti-parallel
Strand 4
A
310 316anti-parallel
Strand 5
A
290 296anti-parallel
Strand 6
A
278 284anti-parallel
Strand 7
A
158 164anti-parallel
Strand 8
A
262 265parallel
Strand 9
A
221 222anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 50first strand
Strand 2
A
75 78anti-parallel
Strand 3
A
67 69anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 366first strand
Strand 2
A
336 340parallel
Strand 3
A
382 386parallel
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There are 9 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 42first strand
Strand 2
B
101 110parallel
Strand 3
B
122 131anti-parallel
Strand 4
B
310 316anti-parallel
Strand 5
B
292 295anti-parallel
Strand 6
B
278 283anti-parallel
Strand 7
B
159 164anti-parallel
Strand 8
B
262 265parallel
Strand 9
B
221 222anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 50first strand
Strand 2
B
75 78anti-parallel
Strand 3
B
66 69anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
362 366first strand
Strand 2
B
336 340parallel
Strand 3
B
382 386parallel
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