Analysis of interatomic Contacts of Structural Units in PDB entry:
3OD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OD5 entry

There are 4 chains in PDB entry 3OD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 31LYS 291
C
 VAL 301ILE 303
B
 PHE 31LYS 291
D
 VAL 301ILE 303
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3OD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
56 60Right-handed 310
Helix 2
2
A
66 81Right-handed alpha
Helix 3
3
A
92 106Right-handed alpha
Helix 4
4
A
136 142Right-handed alpha
Helix 5
5
A
148 152Right-handed 310
Helix 6
6
A
227 240Right-handed alpha
Helix 7
7
A
244 259Right-handed alpha
Helix 8
8
A
266 270Right-handed 310
Helix 9
9
B
56 60Right-handed 310
Helix 10
10
B
66 81Right-handed alpha
Helix 11
11
B
92 106Right-handed alpha
Helix 12
12
B
136 141Right-handed alpha
Helix 13
13
B
142 144Right-handed 310
Helix 14
14
B
148 152Right-handed 310
Helix 15
15
B
227 240Right-handed alpha
Helix 16
16
B
244 259Right-handed alpha
Helix 17
17
B
266 270Right-handed 310
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There are 7 sheets in PDB entry 3OD5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
46 51parallel
Strand 3
A
114 119parallel
Strand 4
A
156 161parallel
Strand 5
A
206 210parallel
Strand 6
A
277 280anti-parallel
Strand 7
B
277 280anti-parallel
Strand 8
B
206 210anti-parallel
Strand 9
B
156 161parallel
Strand 10
B
114 119parallel
Strand 11
B
46 51parallel
Strand 12
B
84 89parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
126 128anti-parallel
Strand 3
A
133 135anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 172first strand
Strand 2
B
200 201anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 201first strand
Strand 2
B
171 172anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 226first strand
Strand 2
A
219 221anti-parallel
Strand 3
C
302 303anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 123first strand
Strand 2
B
126 128anti-parallel
Strand 3
B
133 135anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 226first strand
Strand 2
B
219 221anti-parallel
Strand 3
D
302 303anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il