Analysis of interatomic Contacts of Structural Units in PDB entry:
3ODG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ODG entry

There is 1 chain in PDB entry 3ODG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 13ALA 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 3ODG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
13 15Right-handed 310
Helix 2
2
A
16 29Right-handed alpha
Helix 3
3
A
44 51Right-handed 310
Helix 4
4
A
60 62Right-handed 310
Helix 5
5
A
95 99Right-handed 310
Helix 6
6
A
101 104Right-handed 310
Helix 7
7
A
105 115Right-handed alpha
Helix 8
8
A
173 188Right-handed alpha
Helix 9
9
A
206 216Right-handed alpha
Helix 10
10
A
225 236Right-handed alpha
Helix 11
11
A
258 285Right-handed alpha
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There is 1 sheet ( A) in PDB entry 3ODG.

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 58first strand
Strand 2
A
76 82anti-parallel
Strand 3
A
85 91anti-parallel
Strand 4
A
36 40parallel
Strand 5
A
119 128parallel
Strand 6
A
238 248parallel
Strand 7
A
138 145anti-parallel
Strand 8
A
192 198parallel
Strand 9
A
220 222parallel
Strand 10
A
119 128anti-parallel
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