Analysis of interatomic Contacts of Structural Units in PDB entry:
3ODM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3ODM entry

There are 3 chains in PDB entry 3ODM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 537
B	MET 1	GLY 537
C	MET 1	MET 218

There are211 helices in PDB entry 3ODM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	23	32	Right-handed alpha
Helix 2	2	A	34	38	Right-handed 310
Helix 3	3	A	57	68	Right-handed alpha
Helix 4	4	A	90	113	Right-handed alpha
Helix 5	5	A	127	149	Right-handed alpha
Helix 6	6	A	166	172	Right-handed alpha
Helix 7	7	A	173	187	Right-handed alpha
Helix 8	8	A	200	208	Right-handed alpha
Helix 9	9	A	208	231	Right-handed alpha
Helix 10	10	A	243	247	Right-handed 310
Helix 11	11	A	253	261	Right-handed alpha
Helix 12	12	A	270	276	Right-handed alpha
Helix 13	13	A	278	293	Right-handed alpha
Helix 14	14	A	294	296	Right-handed 310
Helix 15	15	A	302	336	Right-handed alpha
Helix 16	16	A	360	366	Right-handed alpha
Helix 17	17	A	370	379	Right-handed alpha
Helix 18	18	A	390	401	Right-handed alpha
Helix 19	19	A	404	408	Right-handed 310
Helix 20	20	A	409	422	Right-handed alpha
Helix 21	21	A	422	433	Right-handed alpha
Helix 22	22	A	435	445	Right-handed alpha
Helix 23	23	A	457	475	Right-handed alpha
Helix 24	24	A	480	488	Right-handed alpha
Helix 25	25	A	488	507	Right-handed alpha
Helix 26	26	A	508	515	Right-handed alpha
Helix 27	27	A	515	534	Right-handed alpha
Helix 28	28	B	23	33	Right-handed alpha
Helix 29	29	B	34	38	Right-handed 310
Helix 30	30	B	57	68	Right-handed alpha
Helix 31	31	B	90	113	Right-handed alpha
Helix 32	32	B	127	149	Right-handed alpha
Helix 33	33	B	166	172	Right-handed alpha
Helix 34	34	B	172	187	Right-handed alpha
Helix 35	35	B	200	208	Right-handed alpha
Helix 36	36	B	208	231	Right-handed alpha
Helix 37	37	B	243	247	Right-handed 310
Helix 38	38	B	250	252	Right-handed 310
Helix 39	39	B	253	261	Right-handed alpha
Helix 40	40	B	270	276	Right-handed alpha
Helix 41	41	B	277	293	Right-handed alpha
Helix 42	42	B	294	296	Right-handed 310
Helix 43	43	B	302	336	Right-handed alpha
Helix 44	44	B	361	366	Right-handed alpha
Helix 45	45	B	370	379	Right-handed alpha
Helix 46	46	B	390	401	Right-handed alpha
Helix 47	47	B	409	433	Right-handed alpha
Helix 48	48	B	435	445	Right-handed alpha
Helix 49	49	B	457	475	Right-handed alpha
Helix 50	50	B	480	488	Right-handed alpha
Helix 51	51	B	488	506	Right-handed alpha
Helix 52	52	B	508	515	Right-handed alpha
Helix 53	53	B	515	534	Right-handed alpha
Helix 54	54	C	23	33	Right-handed alpha
Helix 55	55	C	34	38	Right-handed 310
Helix 56	56	C	57	69	Right-handed alpha
Helix 57	57	C	90	113	Right-handed alpha
Helix 58	58	C	127	149	Right-handed alpha
Helix 59	59	C	172	187	Right-handed alpha
Helix 60	60	C	200	208	Right-handed alpha
Helix 61	61	C	208	231	Right-handed alpha
Helix 62	62	C	243	247	Right-handed 310
Helix 63	63	C	253	261	Right-handed alpha
Helix 64	64	C	270	276	Right-handed alpha
Helix 65	65	C	278	294	Right-handed alpha
Helix 66	66	C	302	336	Right-handed alpha
Helix 67	67	C	361	366	Right-handed alpha
Helix 68	68	C	370	380	Right-handed alpha
Helix 69	69	C	390	401	Right-handed alpha
Helix 70	70	C	409	433	Right-handed alpha
Helix 71	71	C	435	445	Right-handed alpha
Helix 72	72	C	457	475	Right-handed alpha
Helix 73	73	C	482	488	Right-handed alpha
Helix 74	74	C	488	506	Right-handed alpha
Helix 75	75	C	508	515	Right-handed alpha
Helix 76	76	C	515	534	Right-handed alpha
Helix 77	77	D	20	22	Right-handed 310
Helix 78	78	D	23	33	Right-handed alpha
Helix 79	79	D	34	38	Right-handed 310
Helix 80	80	D	57	69	Right-handed alpha
Helix 81	81	D	90	113	Right-handed alpha
Helix 82	82	D	127	149	Right-handed alpha
Helix 83	83	D	166	172	Right-handed alpha
Helix 84	84	D	172	186	Right-handed alpha
Helix 85	85	D	200	208	Right-handed alpha
Helix 86	86	D	208	230	Right-handed alpha
Helix 87	87	D	243	247	Right-handed 310
Helix 88	88	D	253	261	Right-handed alpha
Helix 89	89	D	270	276	Right-handed alpha
Helix 90	90	D	278	293	Right-handed alpha
Helix 91	91	D	294	296	Right-handed 310
Helix 92	92	D	302	336	Right-handed alpha
Helix 93	93	D	360	366	Right-handed alpha
Helix 94	94	D	370	379	Right-handed alpha
Helix 95	95	D	390	401	Right-handed alpha
Helix 96	96	D	404	408	Right-handed 310
Helix 97	97	D	409	433	Right-handed alpha
Helix 98	98	D	435	445	Right-handed alpha
Helix 99	99	D	457	475	Right-handed alpha
Helix 100	100	D	480	488	Right-handed alpha
Helix 101	101	D	488	506	Right-handed alpha
Helix 102	102	D	508	515	Right-handed alpha
Helix 103	103	D	515	534	Right-handed alpha
Helix 104	104	E	20	22	Right-handed 310
Helix 105	105	E	23	33	Right-handed alpha
Helix 106	106	E	34	38	Right-handed 310
Helix 107	107	E	57	68	Right-handed alpha
Helix 108	108	E	90	113	Right-handed alpha
Helix 109	109	E	127	149	Right-handed alpha
Helix 110	110	E	166	172	Right-handed alpha
Helix 111	111	E	172	187	Right-handed alpha
Helix 112	112	E	200	208	Right-handed alpha
Helix 113	113	E	208	231	Right-handed alpha
Helix 114	114	E	243	247	Right-handed 310
Helix 115	115	E	250	252	Right-handed 310
Helix 116	116	E	253	261	Right-handed alpha
Helix 117	117	E	270	276	Right-handed alpha
Helix 118	118	E	278	293	Right-handed alpha
Helix 119	119	E	294	296	Right-handed 310
Helix 120	120	E	302	336	Right-handed alpha
Helix 121	121	E	360	366	Right-handed alpha
Helix 122	122	E	370	379	Right-handed alpha
Helix 123	123	E	390	401	Right-handed alpha
Helix 124	124	E	404	408	Right-handed 310
Helix 125	125	E	409	433	Right-handed alpha
Helix 126	126	E	435	445	Right-handed alpha
Helix 127	127	E	457	475	Right-handed alpha
Helix 128	128	E	480	488	Right-handed alpha
Helix 129	129	E	488	506	Right-handed alpha
Helix 130	130	E	508	514	Right-handed alpha
Helix 131	131	E	515	534	Right-handed alpha
Helix 132	132	F	23	32	Right-handed alpha
Helix 133	133	F	34	38	Right-handed 310
Helix 134	134	F	57	69	Right-handed alpha
Helix 135	135	F	90	113	Right-handed alpha
Helix 136	136	F	127	147	Right-handed alpha
Helix 137	137	F	166	172	Right-handed alpha
Helix 138	138	F	173	187	Right-handed alpha
Helix 139	139	F	200	208	Right-handed alpha
Helix 140	140	F	208	230	Right-handed alpha
Helix 141	141	F	243	247	Right-handed 310
Helix 142	142	F	253	261	Right-handed alpha
Helix 143	143	F	270	276	Right-handed alpha
Helix 144	144	F	278	293	Right-handed alpha
Helix 145	145	F	294	296	Right-handed 310
Helix 146	146	F	302	336	Right-handed alpha
Helix 147	147	F	361	366	Right-handed alpha
Helix 148	148	F	370	379	Right-handed alpha
Helix 149	149	F	390	401	Right-handed alpha
Helix 150	150	F	404	408	Right-handed 310
Helix 151	151	F	409	421	Right-handed alpha
Helix 152	152	F	421	433	Right-handed alpha
Helix 153	153	F	435	445	Right-handed alpha
Helix 154	154	F	449	453	Right-handed 310
Helix 155	155	F	457	475	Right-handed alpha
Helix 156	156	F	480	488	Right-handed alpha
Helix 157	157	F	488	506	Right-handed alpha
Helix 158	158	F	508	515	Right-handed alpha
Helix 159	159	F	515	534	Right-handed alpha
Helix 160	160	G	23	33	Right-handed alpha
Helix 161	161	G	34	38	Right-handed 310
Helix 162	162	G	57	69	Right-handed alpha
Helix 163	163	G	90	113	Right-handed alpha
Helix 164	164	G	127	149	Right-handed alpha
Helix 165	165	G	166	172	Right-handed alpha
Helix 166	166	G	173	186	Right-handed alpha
Helix 167	167	G	200	208	Right-handed alpha
Helix 168	168	G	208	230	Right-handed alpha
Helix 169	169	G	243	247	Right-handed 310
Helix 170	170	G	253	261	Right-handed alpha
Helix 171	171	G	270	276	Right-handed alpha
Helix 172	172	G	278	293	Right-handed alpha
Helix 173	173	G	294	296	Right-handed 310
Helix 174	174	G	302	336	Right-handed alpha
Helix 175	175	G	361	366	Right-handed alpha
Helix 176	176	G	370	378	Right-handed alpha
Helix 177	177	G	390	401	Right-handed alpha
Helix 178	178	G	409	433	Right-handed alpha
Helix 179	179	G	435	445	Right-handed alpha
Helix 180	180	G	457	475	Right-handed alpha
Helix 181	181	G	480	488	Right-handed alpha
Helix 182	182	G	488	506	Right-handed alpha
Helix 183	183	G	508	515	Right-handed alpha
Helix 184	184	G	515	534	Right-handed alpha
Helix 185	185	H	23	33	Right-handed alpha
Helix 186	186	H	34	38	Right-handed 310
Helix 187	187	H	57	68	Right-handed alpha
Helix 188	188	H	90	113	Right-handed alpha
Helix 189	189	H	127	149	Right-handed alpha
Helix 190	190	H	166	172	Right-handed alpha
Helix 191	191	H	173	186	Right-handed alpha
Helix 192	192	H	200	208	Right-handed alpha
Helix 193	193	H	208	231	Right-handed alpha
Helix 194	194	H	243	247	Right-handed 310
Helix 195	195	H	253	261	Right-handed alpha
Helix 196	196	H	270	276	Right-handed alpha
Helix 197	197	H	278	293	Right-handed alpha
Helix 198	198	H	294	296	Right-handed 310
Helix 199	199	H	302	335	Right-handed alpha
Helix 200	200	H	336	338	Right-handed 310
Helix 201	201	H	360	366	Right-handed alpha
Helix 202	202	H	370	378	Right-handed alpha
Helix 203	203	H	390	401	Right-handed alpha
Helix 204	204	H	404	408	Right-handed 310
Helix 205	205	H	409	433	Right-handed alpha
Helix 206	206	H	435	445	Right-handed alpha
Helix 207	207	H	457	475	Right-handed alpha
Helix 208	208	H	480	488	Right-handed alpha
Helix 209	209	H	488	506	Right-handed alpha
Helix 210	210	H	508	515	Right-handed alpha
Helix 211	211	H	515	534	Right-handed alpha

There are 11 sheets in PDB entry 3ODM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	6	8	first strand
Strand 2	A	44	48	parallel
Strand 3	A	78	82	parallel
Strand 4	A	119	122	parallel
Strand 5	A	159	164	parallel
Strand 6	A	193	199	parallel
Strand 7	A	233	239	parallel
Strand 8	A	266	269	parallel
Strand 9	A	6	8	parallel

Back to list of sheets
Back to top of page

There are 8 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	78	79	first strand
Strand 2	B	44	45	parallel
Strand 3	B	6	8	parallel
Strand 4	B	266	269	parallel
Strand 5	B	233	239	parallel
Strand 6	B	193	199	parallel
Strand 7	B	159	164	parallel
Strand 8	B	119	122	parallel

Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	358	first strand
Strand 2	B	385	387	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	6	8	first strand
Strand 2	C	44	48	parallel
Strand 3	C	78	82	parallel
Strand 4	C	119	122	parallel
Strand 5	C	159	164	parallel
Strand 6	C	193	199	parallel
Strand 7	C	233	239	parallel
Strand 8	C	266	269	parallel
Strand 9	C	6	8	parallel

Back to list of sheets
Back to top of page

There are 8 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	78	79	first strand
Strand 2	D	44	45	parallel
Strand 3	D	6	8	parallel
Strand 4	D	266	269	parallel
Strand 5	D	233	239	parallel
Strand 6	D	193	199	parallel
Strand 7	D	159	164	parallel
Strand 8	D	119	122	parallel

Back to list of sheets
Back to top of page

There are 9 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	8	first strand
Strand 2	E	44	48	parallel
Strand 3	E	78	82	parallel
Strand 4	E	119	122	parallel
Strand 5	E	159	164	parallel
Strand 6	E	193	199	parallel
Strand 7	E	233	239	parallel
Strand 8	E	266	269	parallel
Strand 9	E	6	8	parallel

Back to list of sheets
Back to top of page

There are 6 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	6	8	first strand
Strand 2	F	266	269	parallel
Strand 3	F	233	239	parallel
Strand 4	F	193	199	parallel
Strand 5	F	159	164	parallel
Strand 6	F	119	122	parallel

Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	44	45	first strand
Strand 2	F	78	79	parallel

Back to list of sheets
Back to top of page

There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	356	357	first strand
Strand 2	F	386	387	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	78	79	first strand
Strand 2	G	44	46	parallel
Strand 3	G	6	9	parallel
Strand 4	G	266	269	parallel
Strand 5	G	233	239	parallel
Strand 6	G	193	199	parallel
Strand 7	G	159	164	parallel
Strand 8	G	119	122	parallel

Back to list of sheets
Back to top of page

There are 9 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	8	first strand
Strand 2	H	44	48	parallel
Strand 3	H	78	82	parallel
Strand 4	H	119	122	parallel
Strand 5	H	159	164	parallel
Strand 6	H	193	199	parallel
Strand 7	H	233	239	parallel
Strand 8	H	266	269	parallel
Strand 9	H	6	8	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3ODM

Analysis of interatomic Contacts of Structural Units in PDB entry:
3ODM