Analysis of interatomic Contacts of Structural Units in PDB entry:
3ODP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ODP entry

There is 1 chain in PDB entry 3ODP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0TYR 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 3ODP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 15Right-handed alpha
Helix 2
2
A
17 26Right-handed alpha
Helix 3
3
A
26 54Right-handed alpha
Helix 4
4
A
66 74Right-handed alpha
Helix 5
5
A
75 83Right-handed alpha
Helix 6
6
A
91 96Right-handed alpha
Helix 7
7
A
98 102Right-handed 310
Helix 8
8
A
120 134Right-handed alpha
Helix 9
9
A
148 153Right-handed alpha
Helix 10
10
A
154 156Right-handed 310
Helix 11
11
A
166 170Right-handed 310
Helix 12
12
A
177 190Right-handed alpha
Helix 13
13
A
195 217Right-handed alpha
Helix 14
14
A
217 226Right-handed alpha
Helix 15
15
A
238 255Right-handed alpha
Helix 16
16
A
265 270Right-handed alpha
Helix 17
17
A
271 277Right-handed 310
Helix 18
18
A
290 307Right-handed alpha
Helix 19
19
A
321 326Right-handed alpha
Helix 20
20
A
343 346Right-handed 310
Helix 21
21
A
347 367Right-handed alpha
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There are 3 sheets in PDB entry 3ODP. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 4first strand
Strand 2
A
7 8anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
59 63parallel
Strand 3
A
109 115parallel
Strand 4
A
137 143parallel
Strand 5
A
160 164parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 264first strand
Strand 2
A
231 235parallel
Strand 3
A
281 286parallel
Strand 4
A
312 319parallel
Strand 5
A
330 335parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il