Analysis of interatomic Contacts of Structural Units in PDB entry:
3ODT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ODT entry

There are 2 chains in PDB entry 3ODT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 0SER 296
B
 PHE 0ALA 295
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 3ODT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
290 294Right-handed 310
Helix 2
2
B
290 294Right-handed 310
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There are 14 sheets in PDB entry 3ODT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 9first strand
Strand 2
A
284 288anti-parallel
Strand 3
A
275 279anti-parallel
Strand 4
A
264 269anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 23first strand
Strand 2
A
26 31anti-parallel
Strand 3
A
35 41anti-parallel
Strand 4
A
45 52anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 63first strand
Strand 2
A
68 73anti-parallel
Strand 3
A
78 82anti-parallel
Strand 4
A
94 95anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 108first strand
Strand 2
A
111 116anti-parallel
Strand 3
A
120 125anti-parallel
Strand 4
A
128 134anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 147first strand
Strand 2
A
152 157anti-parallel
Strand 3
A
162 166anti-parallel
Strand 4
A
169 174anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
182 189first strand
Strand 2
A
192 197anti-parallel
Strand 3
A
201 206anti-parallel
Strand 4
A
212 217anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 228first strand
Strand 2
A
234 238anti-parallel
Strand 3
A
242 246anti-parallel
Strand 4
A
253 258anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 9first strand
Strand 2
B
284 288anti-parallel
Strand 3
B
275 279anti-parallel
Strand 4
B
264 269anti-parallel
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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 23first strand
Strand 2
B
26 31anti-parallel
Strand 3
B
35 41anti-parallel
Strand 4
B
45 52anti-parallel
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There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 63first strand
Strand 2
B
68 73anti-parallel
Strand 3
B
78 82anti-parallel
Strand 4
B
93 95anti-parallel
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There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 108first strand
Strand 2
B
111 116anti-parallel
Strand 3
B
120 125anti-parallel
Strand 4
B
128 134anti-parallel
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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 147first strand
Strand 2
B
152 157anti-parallel
Strand 3
B
162 166anti-parallel
Strand 4
B
169 174anti-parallel
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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 189first strand
Strand 2
B
192 197anti-parallel
Strand 3
B
201 206anti-parallel
Strand 4
B
212 217anti-parallel
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There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
223 228first strand
Strand 2
B
234 238anti-parallel
Strand 3
B
242 246anti-parallel
Strand 4
B
253 258anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il