Analysis of interatomic Contacts of Structural Units in PDB entry:
3ODU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ODU entry

There are 2 chains in PDB entry 3ODU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 27GLN 328
B
 CYS 28SER 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 48 helices in PDB entry 3ODU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
36 63Right-handed alpha
Helix 2
2
A
71 89Right-handed alpha
Helix 3
3
A
90 100Right-handed alpha
Helix 4
4
A
104 140Right-handed alpha
Helix 5
5
A
144 154Right-handed alpha
Helix 6
6
A
154 160Right-handed alpha
Helix 7
7
A
160 167Right-handed alpha
Helix 8
8
A
168 174Right-handed alpha
Helix 9
9
A
192 208Right-handed alpha
Helix 10
10
A
208 226Right-handed alpha
Helix 11
11
A
227 229Right-handed 310
Helix 12
12
A
1002 1011Right-handed alpha
Helix 13
13
A
1038 1051Right-handed alpha
Helix 14
14
A
1059 1079Right-handed alpha
Helix 15
15
A
1084 1090Right-handed alpha
Helix 16
16
A
1092 1113Right-handed alpha
Helix 17
17
A
1114 1124Right-handed alpha
Helix 18
18
A
1125 1134Right-handed alpha
Helix 19
19
A
1136 1142Right-handed alpha
Helix 20
20
A
1142 1156Right-handed alpha
Helix 21
21
A
1158 1201Right-handed alpha
Helix 22
22
A
230 267Right-handed alpha
Helix 23
23
A
273 292Right-handed alpha
Helix 24
24
A
293 302Right-handed alpha
Helix 25
25
A
312 318Right-handed alpha
Helix 26
26
A
323 327Right-handed 310
Helix 27
27
B
36 65Right-handed alpha
Helix 28
28
B
71 89Right-handed alpha
Helix 29
29
B
90 100Right-handed alpha
Helix 30
30
B
104 140Right-handed alpha
Helix 31
31
B
144 154Right-handed alpha
Helix 32
32
B
154 160Right-handed alpha
Helix 33
33
B
160 167Right-handed alpha
Helix 34
34
B
168 174Right-handed alpha
Helix 35
35
B
192 208Right-handed alpha
Helix 36
36
B
208 226Right-handed alpha
Helix 37
37
B
901 1012Right-handed alpha
Helix 38
38
B
1038 1051Right-handed alpha
Helix 39
39
B
1059 1079Right-handed alpha
Helix 40
40
B
1084 1091Right-handed alpha
Helix 41
41
B
1092 1113Right-handed alpha
Helix 42
42
B
1114 1123Right-handed alpha
Helix 43
43
B
1125 1134Right-handed alpha
Helix 44
44
B
1136 1142Right-handed alpha
Helix 45
45
B
1142 1156Right-handed alpha
Helix 46
46
B
230 267Right-handed alpha
Helix 47
47
B
273 292Right-handed alpha
Helix 48
48
B
293 302Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 3ODU. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 179first strand
Strand 2
A
184 188anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1014 1019first strand
Strand 2
A
1025 1028anti-parallel
Strand 3
A
1031 1034anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 180first strand
Strand 2
B
183 188anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1014 1019first strand
Strand 2
B
1025 1028anti-parallel
Strand 3
B
1031 1032anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il