Analysis of interatomic Contacts of Structural Units in PDB entry:
3ODW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3ODW entry

There are 2 chains in PDB entry 3ODW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 411PRO 765
B
 PRO 411PRO 765
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 3ODW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
412 442Right-handed alpha
Helix 2
2
A
442 449Right-handed alpha
Helix 3
3
A
453 461Right-handed alpha
Helix 4
4
A
463 484Right-handed alpha
Helix 5
5
A
492 501Right-handed alpha
Helix 6
6
A
501 518Right-handed alpha
Helix 7
7
A
518 533Right-handed alpha
Helix 8
8
A
533 544Right-handed alpha
Helix 9
9
A
546 550Right-handed 310
Helix 10
10
A
553 558Right-handed alpha
Helix 11
11
A
559 577Right-handed alpha
Helix 12
12
A
581 621Right-handed alpha
Helix 13
13
A
744 761Right-handed alpha
Helix 14
14
B
411 442Right-handed alpha
Helix 15
15
B
442 450Right-handed alpha
Helix 16
16
B
453 461Right-handed alpha
Helix 17
17
B
463 484Right-handed alpha
Helix 18
18
B
492 501Right-handed alpha
Helix 19
19
B
501 518Right-handed alpha
Helix 20
20
B
518 533Right-handed alpha
Helix 21
21
B
533 545Right-handed alpha
Helix 22
22
B
546 550Right-handed 310
Helix 23
23
B
553 558Right-handed alpha
Helix 24
24
B
559 577Right-handed alpha
Helix 25
25
B
581 621Right-handed alpha
Helix 26
26
B
711 713Right-handed 310
Helix 27
27
B
745 762Right-handed alpha
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There are 5 sheets in PDB entry 3ODW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 623first strand
Strand 2
A
684 686parallel
Strand 3
A
674 681anti-parallel
Strand 4
A
707 709anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
622 623first strand
Strand 2
A
684 686parallel
Strand 3
A
674 681anti-parallel
Strand 4
A
665 671anti-parallel
Strand 5
A
648 657anti-parallel
Strand 6
A
737 741anti-parallel
Strand 7
A
724 729anti-parallel
Strand 8
A
713 717anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
622 623first strand
Strand 2
B
684 686parallel
Strand 3
B
674 681anti-parallel
Strand 4
B
667 671anti-parallel
Strand 5
B
648 653anti-parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
622 623first strand
Strand 2
B
684 686parallel
Strand 3
B
674 681anti-parallel
Strand 4
B
707 709anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
655 657first strand
Strand 2
B
737 741anti-parallel
Strand 3
B
724 728anti-parallel
Strand 4
B
715 717anti-parallel
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