Analysis of interatomic Contacts of Structural Units in PDB entry:
3OED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OED entry

There are 4 chains in PDB entry 3OED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1PRO 294
C
 GLY 0VAL 129
B
 MET 1PRO 294
D
 GLY 0VAL 129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3OED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 11Right-handed 310
Helix 2
2
A
19 38Right-handed alpha
Helix 3
3
A
47 65Right-handed alpha
Helix 4
4
A
82 97Right-handed alpha
Helix 5
5
A
104 119Right-handed alpha
Helix 6
6
A
137 142Right-handed 310
Helix 7
7
A
145 166Right-handed alpha
Helix 8
8
A
171 188Right-handed alpha
Helix 9
9
A
192 206Right-handed alpha
Helix 10
10
A
210 221Right-handed alpha
Helix 11
11
A
232 251Right-handed alpha
Helix 12
12
A
256 265Right-handed alpha
Helix 13
13
A
274 293Right-handed alpha
Helix 14
14
B
3 11Right-handed 310
Helix 15
15
B
19 38Right-handed alpha
Helix 16
16
B
40 45Right-handed alpha
Helix 17
17
B
47 65Right-handed alpha
Helix 18
18
B
82 97Right-handed alpha
Helix 19
19
B
104 119Right-handed alpha
Helix 20
20
B
133 142Right-handed 310
Helix 21
21
B
145 166Right-handed alpha
Helix 22
22
B
171 188Right-handed alpha
Helix 23
23
B
192 206Right-handed alpha
Helix 24
24
B
211 219Right-handed alpha
Helix 25
25
B
221 225Right-handed 310
Helix 26
26
B
232 251Right-handed alpha
Helix 27
27
B
255 266Right-handed alpha
Helix 28
28
B
275 293Right-handed alpha
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There are 13 sheets in PDB entry 3OED. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
C
25 31anti-parallel
Strand 3
C
12 14anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
102 103first strand
Strand 2
C
25 31anti-parallel
Strand 3
C
42 46anti-parallel
Strand 4
C
54 55anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2 3first strand
Strand 2
C
21 22anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
35 38first strand
Strand 2
C
61 64anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
79 81first strand
Strand 2
C
93 98anti-parallel
Strand 3
C
109 112anti-parallel
Strand 4
C
118 119anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
103 105first strand
Strand 2
C
125 127anti-parallel
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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 103first strand
Strand 2
D
25 31anti-parallel
Strand 3
D
12 14anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 103first strand
Strand 2
D
25 31anti-parallel
Strand 3
D
42 46anti-parallel
Strand 4
D
54 55anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
2 3first strand
Strand 2
D
21 22anti-parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
35 38first strand
Strand 2
D
61 64anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
79 81first strand
Strand 2
D
96 98anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
102 105first strand
Strand 2
D
125 128anti-parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
111 112first strand
Strand 2
D
118 119anti-parallel
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