Analysis of interatomic Contacts of Structural Units in PDB entry:
3OEP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OEP entry

There is 1 chain in PDB entry 3OEP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1SER 493
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3OEP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 31Right-handed alpha
Helix 2
2
A
56 67Right-handed alpha
Helix 3
3
A
88 97Right-handed alpha
Helix 4
4
A
99 109Right-handed alpha
Helix 5
5
A
130 134Right-handed 310
Helix 6
6
A
242 246Right-handed 310
Helix 7
7
A
254 265Right-handed alpha
Helix 8
8
A
401 409Right-handed alpha
Helix 9
9
A
476 481Right-handed alpha
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There are 6 sheets in PDB entry 3OEP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 8first strand
Strand 2
A
45 50anti-parallel
Strand 3
A
36 42anti-parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 83first strand
Strand 2
A
169 174anti-parallel
Strand 3
A
149 153anti-parallel
Strand 4
A
156 159anti-parallel
Strand 5
A
124 127anti-parallel
Strand 6
A
112 117anti-parallel
Strand 7
A
194 199anti-parallel
Strand 8
A
77 83parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 145first strand
Strand 2
A
164 166anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 307first strand
Strand 2
A
298 302anti-parallel
Strand 3
A
320 325anti-parallel
Strand 4
A
282 285anti-parallel
Strand 5
A
221 227anti-parallel
Strand 6
A
366 368anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
273 277anti-parallel
Strand 3
A
331 336anti-parallel
Strand 4
A
289 295anti-parallel
Strand 5
A
311 315anti-parallel
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There are 9 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 439first strand
Strand 2
A
463 472anti-parallel
Strand 3
A
444 447anti-parallel
Strand 4
A
454 456anti-parallel
Strand 5
A
422 426anti-parallel
Strand 6
A
413 418anti-parallel
Strand 7
A
488 492anti-parallel
Strand 8
A
390 396parallel
Strand 9
A
463 472anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il