Analysis of interatomic Contacts of Structural Units in PDB entry:
3OF3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3OF3 entry

There are 6 chains in PDB entry 3OF3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 15	TYR 254
B	ALA 15	TYR 254
C	ALA 15	TYR 254
D	ALA 15	ALA 252
E	ALA 15	TYR 254
F	ALA 15	LYS 128

There are108 helices in PDB entry 3OF3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	35	47	Right-handed alpha
Helix 2	2	A	55	59	Right-handed 310
Helix 3	3	A	79	95	Right-handed alpha
Helix 4	4	A	128	134	Right-handed alpha
Helix 5	5	A	144	158	Right-handed alpha
Helix 6	6	A	178	187	Right-handed alpha
Helix 7	7	A	195	207	Right-handed alpha
Helix 8	8	A	227	234	Right-handed alpha
Helix 9	9	A	235	251	Right-handed alpha
Helix 10	10	B	35	47	Right-handed alpha
Helix 11	11	B	55	59	Right-handed 310
Helix 12	12	B	79	95	Right-handed alpha
Helix 13	13	B	128	134	Right-handed alpha
Helix 14	14	B	144	159	Right-handed alpha
Helix 15	15	B	179	187	Right-handed alpha
Helix 16	16	B	195	206	Right-handed alpha
Helix 17	17	B	227	234	Right-handed alpha
Helix 18	18	B	235	251	Right-handed alpha
Helix 19	19	C	35	47	Right-handed alpha
Helix 20	20	C	55	59	Right-handed 310
Helix 21	21	C	79	95	Right-handed alpha
Helix 22	22	C	128	134	Right-handed alpha
Helix 23	23	C	144	158	Right-handed alpha
Helix 24	24	C	179	187	Right-handed alpha
Helix 25	25	C	195	207	Right-handed alpha
Helix 26	26	C	227	234	Right-handed alpha
Helix 27	27	C	235	251	Right-handed alpha
Helix 28	28	D	35	47	Right-handed alpha
Helix 29	29	D	55	59	Right-handed 310
Helix 30	30	D	79	95	Right-handed alpha
Helix 31	31	D	128	134	Right-handed alpha
Helix 32	32	D	144	158	Right-handed alpha
Helix 33	33	D	179	187	Right-handed alpha
Helix 34	34	D	195	207	Right-handed alpha
Helix 35	35	D	227	234	Right-handed alpha
Helix 36	36	D	235	252	Right-handed alpha
Helix 37	37	E	35	47	Right-handed alpha
Helix 38	38	E	55	59	Right-handed 310
Helix 39	39	E	79	95	Right-handed alpha
Helix 40	40	E	128	134	Right-handed alpha
Helix 41	41	E	144	158	Right-handed alpha
Helix 42	42	E	178	187	Right-handed alpha
Helix 43	43	E	195	207	Right-handed alpha
Helix 44	44	E	227	234	Right-handed alpha
Helix 45	45	E	235	251	Right-handed alpha
Helix 46	46	F	35	46	Right-handed alpha
Helix 47	47	F	55	59	Right-handed 310
Helix 48	48	F	79	95	Right-handed alpha
Helix 49	49	F	128	134	Right-handed alpha
Helix 50	50	F	144	158	Right-handed alpha
Helix 51	51	F	179	187	Right-handed alpha
Helix 52	52	F	195	207	Right-handed alpha
Helix 53	53	F	227	234	Right-handed alpha
Helix 54	54	F	235	251	Right-handed alpha
Helix 55	55	G	35	47	Right-handed alpha
Helix 56	56	G	55	59	Right-handed 310
Helix 57	57	G	79	95	Right-handed alpha
Helix 58	58	G	128	134	Right-handed alpha
Helix 59	59	G	144	158	Right-handed alpha
Helix 60	60	G	179	187	Right-handed alpha
Helix 61	61	G	195	207	Right-handed alpha
Helix 62	62	G	227	234	Right-handed alpha
Helix 63	63	G	235	251	Right-handed alpha
Helix 64	64	H	35	47	Right-handed alpha
Helix 65	65	H	55	59	Right-handed 310
Helix 66	66	H	79	95	Right-handed alpha
Helix 67	67	H	128	134	Right-handed alpha
Helix 68	68	H	144	159	Right-handed alpha
Helix 69	69	H	179	187	Right-handed alpha
Helix 70	70	H	195	207	Right-handed alpha
Helix 71	71	H	227	234	Right-handed alpha
Helix 72	72	H	235	250	Right-handed alpha
Helix 73	73	I	35	47	Right-handed alpha
Helix 74	74	I	55	59	Right-handed 310
Helix 75	75	I	79	95	Right-handed alpha
Helix 76	76	I	128	134	Right-handed alpha
Helix 77	77	I	144	158	Right-handed alpha
Helix 78	78	I	178	187	Right-handed alpha
Helix 79	79	I	195	207	Right-handed alpha
Helix 80	80	I	227	234	Right-handed alpha
Helix 81	81	I	235	251	Right-handed alpha
Helix 82	82	J	35	47	Right-handed alpha
Helix 83	83	J	55	59	Right-handed 310
Helix 84	84	J	79	95	Right-handed alpha
Helix 85	85	J	128	134	Right-handed alpha
Helix 86	86	J	144	158	Right-handed alpha
Helix 87	87	J	179	187	Right-handed alpha
Helix 88	88	J	195	207	Right-handed alpha
Helix 89	89	J	227	234	Right-handed alpha
Helix 90	90	J	235	251	Right-handed alpha
Helix 91	91	K	35	47	Right-handed alpha
Helix 92	92	K	55	59	Right-handed 310
Helix 93	93	K	79	95	Right-handed alpha
Helix 94	94	K	128	134	Right-handed alpha
Helix 95	95	K	144	158	Right-handed alpha
Helix 96	96	K	179	187	Right-handed alpha
Helix 97	97	K	195	207	Right-handed alpha
Helix 98	98	K	227	234	Right-handed alpha
Helix 99	99	K	235	251	Right-handed alpha
Helix 100	100	L	35	47	Right-handed alpha
Helix 101	101	L	55	59	Right-handed 310
Helix 102	102	L	79	95	Right-handed alpha
Helix 103	103	L	128	134	Right-handed alpha
Helix 104	104	L	144	159	Right-handed alpha
Helix 105	105	L	179	187	Right-handed alpha
Helix 106	106	L	195	207	Right-handed alpha
Helix 107	107	L	227	234	Right-handed alpha
Helix 108	108	L	235	251	Right-handed alpha

There are 14 sheets in PDB entry 3OF3. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N,

There are 10 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	54	first strand
Strand 2	A	61	66	anti-parallel
Strand 3	A	69	74	anti-parallel
Strand 4	A	29	32	parallel
Strand 5	A	98	107	parallel
Strand 6	A	209	219	parallel
Strand 7	A	117	125	anti-parallel
Strand 8	A	162	169	parallel
Strand 9	A	191	193	parallel
Strand 10	A	98	107	anti-parallel

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There are 10 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	54	first strand
Strand 2	B	61	66	anti-parallel
Strand 3	B	69	74	anti-parallel
Strand 4	B	29	32	parallel
Strand 5	B	98	107	parallel
Strand 6	B	209	219	parallel
Strand 7	B	117	125	anti-parallel
Strand 8	B	162	169	parallel
Strand 9	B	191	193	parallel
Strand 10	B	98	107	anti-parallel

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There are 10 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	54	first strand
Strand 2	C	61	66	anti-parallel
Strand 3	C	69	74	anti-parallel
Strand 4	C	29	32	parallel
Strand 5	C	98	107	parallel
Strand 6	C	209	219	parallel
Strand 7	C	117	125	anti-parallel
Strand 8	C	162	169	parallel
Strand 9	C	191	193	parallel
Strand 10	C	98	107	anti-parallel

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There are 10 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	54	first strand
Strand 2	D	61	66	anti-parallel
Strand 3	D	69	74	anti-parallel
Strand 4	D	29	32	parallel
Strand 5	D	98	107	parallel
Strand 6	D	209	219	parallel
Strand 7	D	117	125	anti-parallel
Strand 8	D	162	169	parallel
Strand 9	D	189	193	parallel
Strand 10	D	98	107	anti-parallel

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There are 10 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	54	first strand
Strand 2	E	61	66	anti-parallel
Strand 3	E	69	74	anti-parallel
Strand 4	E	29	32	parallel
Strand 5	E	98	107	parallel
Strand 6	E	209	219	parallel
Strand 7	E	117	125	anti-parallel
Strand 8	E	162	169	parallel
Strand 9	E	191	193	parallel
Strand 10	E	98	107	anti-parallel

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There are 10 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	54	first strand
Strand 2	F	61	66	anti-parallel
Strand 3	F	69	74	anti-parallel
Strand 4	F	29	32	parallel
Strand 5	F	98	107	parallel
Strand 6	F	209	219	parallel
Strand 7	F	117	125	anti-parallel
Strand 8	F	162	169	parallel
Strand 9	F	191	193	parallel
Strand 10	F	98	107	anti-parallel

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There are 10 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	48	54	first strand
Strand 2	G	61	66	anti-parallel
Strand 3	G	69	74	anti-parallel
Strand 4	G	29	32	parallel
Strand 5	G	98	107	parallel
Strand 6	G	209	219	parallel
Strand 7	G	117	125	anti-parallel
Strand 8	G	162	169	parallel
Strand 9	G	191	193	parallel
Strand 10	G	98	107	anti-parallel

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There are 9 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	54	first strand
Strand 2	H	61	66	anti-parallel
Strand 3	H	69	74	anti-parallel
Strand 4	H	29	32	parallel
Strand 5	H	98	107	parallel
Strand 6	H	191	193	anti-parallel
Strand 7	H	162	169	parallel
Strand 8	H	117	125	parallel
Strand 9	H	141	142	anti-parallel

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There are 8 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	54	first strand
Strand 2	H	61	66	anti-parallel
Strand 3	H	69	74	anti-parallel
Strand 4	H	29	32	parallel
Strand 5	H	98	107	parallel
Strand 6	H	209	219	parallel
Strand 7	H	117	125	anti-parallel
Strand 8	H	141	142	anti-parallel

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There are 10 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	48	54	first strand
Strand 2	I	61	66	anti-parallel
Strand 3	I	69	74	anti-parallel
Strand 4	I	29	32	parallel
Strand 5	I	98	107	parallel
Strand 6	I	209	219	parallel
Strand 7	I	117	125	anti-parallel
Strand 8	I	162	169	parallel
Strand 9	I	191	193	parallel
Strand 10	I	98	107	anti-parallel

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There are 10 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	48	54	first strand
Strand 2	J	61	66	anti-parallel
Strand 3	J	69	74	anti-parallel
Strand 4	J	29	32	parallel
Strand 5	J	98	107	parallel
Strand 6	J	209	219	parallel
Strand 7	J	117	125	anti-parallel
Strand 8	J	162	169	parallel
Strand 9	J	191	193	parallel
Strand 10	J	98	107	anti-parallel

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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	48	54	first strand
Strand 2	K	61	66	anti-parallel
Strand 3	K	69	74	anti-parallel
Strand 4	K	29	32	parallel
Strand 5	K	98	107	parallel
Strand 6	K	191	193	anti-parallel
Strand 7	K	162	169	parallel
Strand 8	K	117	125	parallel
Strand 9	K	141	142	anti-parallel

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There are 8 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	48	54	first strand
Strand 2	K	61	66	anti-parallel
Strand 3	K	69	74	anti-parallel
Strand 4	K	29	32	parallel
Strand 5	K	98	107	parallel
Strand 6	K	209	219	parallel
Strand 7	K	117	125	anti-parallel
Strand 8	K	141	142	anti-parallel

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There are 10 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	48	54	first strand
Strand 2	L	61	66	anti-parallel
Strand 3	L	69	74	anti-parallel
Strand 4	L	29	32	parallel
Strand 5	L	98	107	parallel
Strand 6	L	209	219	parallel
Strand 7	L	117	125	anti-parallel
Strand 8	L	162	169	parallel
Strand 9	L	191	193	parallel
Strand 10	L	98	107	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3OF3

Analysis of interatomic Contacts of Structural Units in PDB entry:
3OF3