Analysis of interatomic Contacts of Structural Units in PDB entry:
3OF5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OF5 entry

There are 2 chains in PDB entry 3OF5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2ILE 219
B
 ALA 0ILE 219
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 3OF5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 29Right-handed alpha
Helix 2
2
A
50 60Right-handed alpha
Helix 3
3
A
65 70Right-handed alpha
Helix 4
4
A
79 87Right-handed alpha
Helix 5
5
A
92 102Right-handed alpha
Helix 6
6
A
103 106Right-handed 310
Helix 7
7
A
128 137Right-handed alpha
Helix 8
8
A
149 164Right-handed alpha
Helix 9
9
A
182 195Right-handed alpha
Helix 10
10
A
207 219Right-handed alpha
Helix 11
11
B
14 29Right-handed alpha
Helix 12
12
B
50 60Right-handed alpha
Helix 13
13
B
65 70Right-handed alpha
Helix 14
14
B
79 88Right-handed alpha
Helix 15
15
B
92 102Right-handed alpha
Helix 16
16
B
103 106Right-handed 310
Helix 17
17
B
129 137Right-handed alpha
Helix 18
18
B
149 164Right-handed alpha
Helix 19
19
B
182 195Right-handed alpha
Helix 20
20
B
207 219Right-handed alpha
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There are 5 sheets in PDB entry 3OF5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
110 118parallel
Strand 3
A
2 8parallel
Strand 4
A
140 145parallel
Strand 5
A
168 175parallel
Strand 6
A
200 203parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
72 74parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
110 114parallel
Strand 3
B
2 8parallel
Strand 4
B
140 145parallel
Strand 5
B
168 175parallel
Strand 6
B
200 203parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 41first strand
Strand 2
B
72 74parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 124first strand
Strand 2
B
127 128anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il