Analysis of interatomic Contacts of Structural Units in PDB entry:
3OF7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OF7 entry

There is 1 chain in PDB entry 3OF7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 25LEU 483
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3OF7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 35Right-handed 310
Helix 2
2
A
36 41Right-handed alpha
Helix 3
3
A
64 67Right-handed 310
Helix 4
4
A
144 149Right-handed alpha
Helix 5
5
A
154 157Right-handed 310
Helix 6
6
A
158 163Right-handed alpha
Helix 7
7
A
258 262Right-handed 310
Helix 8
8
A
365 369Right-handed 310
Helix 9
9
A
469 482Right-handed alpha
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There are 8 sheets in PDB entry 3OF7. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 75first strand
Strand 2
A
47 53anti-parallel
Strand 3
A
460 467anti-parallel
Strand 4
A
449 456anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 91first strand
Strand 2
A
95 100anti-parallel
Strand 3
A
105 109anti-parallel
Strand 4
A
151 152anti-parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 172first strand
Strand 2
A
176 181anti-parallel
Strand 3
A
186 190anti-parallel
Strand 4
A
209 214anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 194first strand
Strand 2
A
197 200anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
223 228first strand
Strand 2
A
232 237anti-parallel
Strand 3
A
242 246anti-parallel
Strand 4
A
269 270anti-parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 281first strand
Strand 2
A
285 290anti-parallel
Strand 3
A
295 300anti-parallel
Strand 4
A
317 323anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 337first strand
Strand 2
A
341 346anti-parallel
Strand 3
A
351 356anti-parallel
Strand 4
A
381 389anti-parallel
Strand 5
A
374 375anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 401first strand
Strand 2
A
405 410anti-parallel
Strand 3
A
415 419anti-parallel
Strand 4
A
435 440anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il