Analysis of interatomic Contacts of Structural Units in PDB entry:
3OF9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OF9 entry

There is 1 chain in PDB entry 3OF9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1VAL 221
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 3OF9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 12Right-handed 310
Helix 2
2
A
25 44Right-handed alpha
Helix 3
3
A
50 58Right-handed alpha
Helix 4
4
A
59 62Right-handed 310
Helix 5
5
A
64 68Right-handed 310
Helix 6
6
A
70 82Right-handed alpha
Helix 7
7
A
102 104Right-handed 310
Helix 8
8
A
119 130Right-handed alpha
Helix 9
9
A
141 146Right-handed alpha
Helix 10
10
A
208 212Right-handed 310
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There are 4 sheets in PDB entry 3OF9. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
164 173anti-parallel
Strand 3
A
133 137anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 7first strand
Strand 2
A
164 173anti-parallel
Strand 3
A
182 187anti-parallel
Strand 4
A
199 203anti-parallel
Strand 5
A
151 152parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 85first strand
Strand 2
A
106 108anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 115first strand
Strand 2
A
217 219anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il