Analysis of interatomic Contacts of Structural Units in PDB entry:
3OFK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OFK entry

There are 4 chains in PDB entry 3OFK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP -4GLU 199
B
 ASP 4GLU 199
C
 ASP 4PRO 205
D
 ASP 23ILE 203
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3OFK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
5 15Right-handed alpha
Helix 2
2
A
18 22Right-handed 310
Helix 3
3
A
25 40Right-handed alpha
Helix 4
4
A
56 63Right-handed alpha
Helix 5
5
A
75 86Right-handed alpha
Helix 6
6
A
116 120Right-handed 310
Helix 7
7
A
122 136Right-handed alpha
Helix 8
8
A
149 156Right-handed alpha
Helix 9
9
A
161 173Right-handed alpha
Helix 10
10
B
5 15Right-handed alpha
Helix 11
11
B
18 22Right-handed 310
Helix 12
12
B
25 40Right-handed alpha
Helix 13
13
B
56 63Right-handed alpha
Helix 14
14
B
64 66Right-handed 310
Helix 15
15
B
75 86Right-handed alpha
Helix 16
16
B
116 120Right-handed 310
Helix 17
17
B
122 136Right-handed alpha
Helix 18
18
B
149 156Right-handed alpha
Helix 19
19
B
161 173Right-handed alpha
Helix 20
20
C
5 15Right-handed alpha
Helix 21
21
C
18 22Right-handed 310
Helix 22
22
C
25 41Right-handed alpha
Helix 23
23
C
56 63Right-handed alpha
Helix 24
24
C
64 66Right-handed 310
Helix 25
25
C
75 86Right-handed alpha
Helix 26
26
C
98 102Right-handed 310
Helix 27
27
C
116 120Right-handed 310
Helix 28
28
C
122 136Right-handed alpha
Helix 29
29
C
149 156Right-handed alpha
Helix 30
30
C
161 173Right-handed alpha
Helix 31
31
D
25 41Right-handed alpha
Helix 32
32
D
56 63Right-handed alpha
Helix 33
33
D
75 86Right-handed alpha
Helix 34
34
D
116 120Right-handed 310
Helix 35
35
D
122 136Right-handed alpha
Helix 36
36
D
149 156Right-handed alpha
Helix 37
37
D
161 173Right-handed alpha
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There are 4 sheets in PDB entry 3OFK. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 96first strand
Strand 2
A
66 73parallel
Strand 3
A
45 51parallel
Strand 4
A
108 114parallel
Strand 5
A
137 148parallel
Strand 6
A
189 196anti-parallel
Strand 7
A
174 182anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 95first strand
Strand 2
B
69 72parallel
Strand 3
B
48 51parallel
Strand 4
B
108 114parallel
Strand 5
B
137 148parallel
Strand 6
B
189 196anti-parallel
Strand 7
B
174 182anti-parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
92 95first strand
Strand 2
C
69 72parallel
Strand 3
C
48 51parallel
Strand 4
C
108 114parallel
Strand 5
C
137 148parallel
Strand 6
C
189 196anti-parallel
Strand 7
C
174 182anti-parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
92 96first strand
Strand 2
D
66 73parallel
Strand 3
D
45 51parallel
Strand 4
D
108 114parallel
Strand 5
D
137 148parallel
Strand 6
D
189 196anti-parallel
Strand 7
D
174 182anti-parallel
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