Analysis of interatomic Contacts of Structural Units in PDB entry:
3OFT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OFT entry

There are 3 chains in PDB entry 3OFT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 396
B
 MET 1ALA 396
C
 MET 1ALA 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 62 helices in PDB entry 3OFT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 9Right-handed 310
Helix 2
2
A
25 32Right-handed alpha
Helix 3
3
A
33 36Right-handed 310
Helix 4
4
A
53 63Right-handed alpha
Helix 5
5
A
77 83Right-handed alpha
Helix 6
6
A
90 105Right-handed alpha
Helix 7
7
A
106 129Right-handed alpha
Helix 8
8
A
136 140Right-handed alpha
Helix 9
9
A
143 153Right-handed alpha
Helix 10
10
A
156 158Right-handed 310
Helix 11
11
A
159 172Right-handed alpha
Helix 12
12
A
178 200Right-handed alpha
Helix 13
13
A
204 211Right-handed alpha
Helix 14
14
A
220 253Right-handed alpha
Helix 15
15
A
253 263Right-handed alpha
Helix 16
16
A
266 278Right-handed alpha
Helix 17
17
A
308 313Right-handed alpha
Helix 18
18
A
331 335Right-handed 310
Helix 19
19
A
340 344Right-handed 310
Helix 20
20
A
347 366Right-handed alpha
Helix 21
21
B
7 9Right-handed 310
Helix 22
22
B
25 32Right-handed alpha
Helix 23
23
B
33 36Right-handed 310
Helix 24
24
B
53 63Right-handed alpha
Helix 25
25
B
77 83Right-handed alpha
Helix 26
26
B
90 105Right-handed alpha
Helix 27
27
B
106 129Right-handed alpha
Helix 28
28
B
136 140Right-handed alpha
Helix 29
29
B
143 153Right-handed alpha
Helix 30
30
B
156 158Right-handed 310
Helix 31
31
B
159 172Right-handed alpha
Helix 32
32
B
178 200Right-handed alpha
Helix 33
33
B
204 211Right-handed alpha
Helix 34
34
B
220 235Right-handed alpha
Helix 35
35
B
236 253Right-handed alpha
Helix 36
36
B
253 263Right-handed alpha
Helix 37
37
B
266 278Right-handed alpha
Helix 38
38
B
308 313Right-handed alpha
Helix 39
39
B
331 335Right-handed 310
Helix 40
40
B
340 344Right-handed 310
Helix 41
41
B
347 366Right-handed alpha
Helix 42
42
C
7 9Right-handed 310
Helix 43
43
C
25 32Right-handed alpha
Helix 44
44
C
33 36Right-handed 310
Helix 45
45
C
44 47Right-handed 310
Helix 46
46
C
53 63Right-handed alpha
Helix 47
47
C
77 83Right-handed alpha
Helix 48
48
C
90 105Right-handed alpha
Helix 49
49
C
106 129Right-handed alpha
Helix 50
50
C
136 140Right-handed alpha
Helix 51
51
C
143 153Right-handed alpha
Helix 52
52
C
156 158Right-handed 310
Helix 53
53
C
159 167Right-handed alpha
Helix 54
54
C
178 200Right-handed alpha
Helix 55
55
C
204 211Right-handed alpha
Helix 56
56
C
220 253Right-handed alpha
Helix 57
57
C
253 263Right-handed alpha
Helix 58
58
C
266 278Right-handed alpha
Helix 59
59
C
308 313Right-handed alpha
Helix 60
60
C
331 335Right-handed 310
Helix 61
61
C
340 344Right-handed 310
Helix 62
62
C
347 366Right-handed alpha
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There are 12 sheets in PDB entry 3OFT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
39 42parallel
Strand 3
A
48 51anti-parallel
Strand 4
A
303 307parallel
Strand 5
A
282 287anti-parallel
Strand 6
A
67 68anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
391 394anti-parallel
Strand 3
A
369 371anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 293first strand
Strand 2
A
296 298anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 380first strand
Strand 2
A
386 389anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
39 42parallel
Strand 3
B
48 51anti-parallel
Strand 4
B
303 307parallel
Strand 5
B
282 287anti-parallel
Strand 6
B
67 68anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 135first strand
Strand 2
B
391 394anti-parallel
Strand 3
B
369 371anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 293first strand
Strand 2
B
296 298anti-parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 380first strand
Strand 2
B
386 389anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
39 42parallel
Strand 3
C
48 51anti-parallel
Strand 4
C
303 307parallel
Strand 5
C
282 287anti-parallel
Strand 6
C
67 68anti-parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 135first strand
Strand 2
C
391 394anti-parallel
Strand 3
C
369 371anti-parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
291 293first strand
Strand 2
C
296 298anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
378 380first strand
Strand 2
C
386 389anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il