Analysis of interatomic Contacts of Structural Units in PDB entry:
3OFU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OFU entry

There are 6 chains in PDB entry 3OFU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 396
B
 MET 1ALA 396
C
 MET 1ALA 396
D
 MET 1ALA 396
E
 MET 1ALA 396
F
 MET 1ALA 396
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are127 helices in PDB entry 3OFU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
7 9Right-handed 310
Helix 2
2
A
25 32Right-handed alpha
Helix 3
3
A
33 36Right-handed 310
Helix 4
4
A
53 63Right-handed alpha
Helix 5
5
A
77 83Right-handed alpha
Helix 6
6
A
90 105Right-handed alpha
Helix 7
7
A
106 129Right-handed alpha
Helix 8
8
A
136 140Right-handed alpha
Helix 9
9
A
143 153Right-handed alpha
Helix 10
10
A
156 158Right-handed 310
Helix 11
11
A
159 169Right-handed alpha
Helix 12
12
A
178 200Right-handed alpha
Helix 13
13
A
204 211Right-handed alpha
Helix 14
14
A
220 235Right-handed alpha
Helix 15
15
A
236 253Right-handed alpha
Helix 16
16
A
253 263Right-handed alpha
Helix 17
17
A
266 278Right-handed alpha
Helix 18
18
A
308 313Right-handed alpha
Helix 19
19
A
331 335Right-handed 310
Helix 20
20
A
340 344Right-handed 310
Helix 21
21
A
347 366Right-handed alpha
Helix 22
22
B
7 9Right-handed 310
Helix 23
23
B
25 32Right-handed alpha
Helix 24
24
B
33 35Right-handed 310
Helix 25
25
B
53 63Right-handed alpha
Helix 26
26
B
77 83Right-handed alpha
Helix 27
27
B
90 105Right-handed alpha
Helix 28
28
B
106 113Right-handed alpha
Helix 29
29
B
113 129Right-handed alpha
Helix 30
30
B
136 140Right-handed alpha
Helix 31
31
B
143 153Right-handed alpha
Helix 32
32
B
156 158Right-handed 310
Helix 33
33
B
159 168Right-handed alpha
Helix 34
34
B
178 200Right-handed alpha
Helix 35
35
B
204 211Right-handed alpha
Helix 36
36
B
220 235Right-handed alpha
Helix 37
37
B
236 252Right-handed alpha
Helix 38
38
B
253 263Right-handed alpha
Helix 39
39
B
266 278Right-handed alpha
Helix 40
40
B
308 313Right-handed alpha
Helix 41
41
B
331 335Right-handed 310
Helix 42
42
B
340 344Right-handed 310
Helix 43
43
B
347 366Right-handed alpha
Helix 44
44
C
25 32Right-handed alpha
Helix 45
45
C
33 36Right-handed 310
Helix 46
46
C
44 47Right-handed 310
Helix 47
47
C
53 63Right-handed alpha
Helix 48
48
C
77 83Right-handed alpha
Helix 49
49
C
90 105Right-handed alpha
Helix 50
50
C
106 127Right-handed alpha
Helix 51
51
C
128 131Right-handed 310
Helix 52
52
C
136 140Right-handed alpha
Helix 53
53
C
143 153Right-handed alpha
Helix 54
54
C
156 158Right-handed 310
Helix 55
55
C
159 169Right-handed alpha
Helix 56
56
C
170 172Right-handed 310
Helix 57
57
C
178 200Right-handed alpha
Helix 58
58
C
204 211Right-handed alpha
Helix 59
59
C
220 235Right-handed alpha
Helix 60
60
C
236 253Right-handed alpha
Helix 61
61
C
253 263Right-handed alpha
Helix 62
62
C
266 278Right-handed alpha
Helix 63
63
C
308 313Right-handed alpha
Helix 64
64
C
331 335Right-handed 310
Helix 65
65
C
340 344Right-handed 310
Helix 66
66
C
347 366Right-handed alpha
Helix 67
67
D
25 32Right-handed alpha
Helix 68
68
D
33 36Right-handed 310
Helix 69
69
D
44 47Right-handed 310
Helix 70
70
D
53 63Right-handed alpha
Helix 71
71
D
77 83Right-handed alpha
Helix 72
72
D
90 105Right-handed alpha
Helix 73
73
D
106 129Right-handed alpha
Helix 74
74
D
136 140Right-handed alpha
Helix 75
75
D
143 153Right-handed alpha
Helix 76
76
D
156 158Right-handed 310
Helix 77
77
D
159 168Right-handed alpha
Helix 78
78
D
178 200Right-handed alpha
Helix 79
79
D
204 211Right-handed alpha
Helix 80
80
D
220 235Right-handed alpha
Helix 81
81
D
236 253Right-handed alpha
Helix 82
82
D
253 263Right-handed alpha
Helix 83
83
D
266 278Right-handed alpha
Helix 84
84
D
308 313Right-handed alpha
Helix 85
85
D
331 335Right-handed 310
Helix 86
86
D
340 344Right-handed 310
Helix 87
87
D
347 366Right-handed alpha
Helix 88
88
E
7 9Right-handed 310
Helix 89
89
E
25 32Right-handed alpha
Helix 90
90
E
33 36Right-handed 310
Helix 91
91
E
44 47Right-handed 310
Helix 92
92
E
53 63Right-handed alpha
Helix 93
93
E
78 83Right-handed alpha
Helix 94
94
E
90 104Right-handed alpha
Helix 95
95
E
106 129Right-handed alpha
Helix 96
96
E
136 140Right-handed alpha
Helix 97
97
E
143 153Right-handed alpha
Helix 98
98
E
159 168Right-handed alpha
Helix 99
99
E
178 200Right-handed alpha
Helix 100
100
E
204 211Right-handed alpha
Helix 101
101
E
220 253Right-handed alpha
Helix 102
102
E
253 263Right-handed alpha
Helix 103
103
E
266 278Right-handed alpha
Helix 104
104
E
308 313Right-handed alpha
Helix 105
105
E
331 335Right-handed 310
Helix 106
106
E
340 344Right-handed 310
Helix 107
107
E
347 366Right-handed alpha
Helix 108
108
F
7 9Right-handed 310
Helix 109
109
F
25 31Right-handed alpha
Helix 110
110
F
32 34Right-handed 310
Helix 111
111
F
44 47Right-handed 310
Helix 112
112
F
53 63Right-handed alpha
Helix 113
113
F
78 83Right-handed alpha
Helix 114
114
F
90 104Right-handed alpha
Helix 115
115
F
106 129Right-handed alpha
Helix 116
116
F
136 140Right-handed alpha
Helix 117
117
F
143 153Right-handed alpha
Helix 118
118
F
159 168Right-handed alpha
Helix 119
119
F
178 200Right-handed alpha
Helix 120
120
F
204 211Right-handed alpha
Helix 121
121
F
220 253Right-handed alpha
Helix 122
122
F
253 263Right-handed alpha
Helix 123
123
F
266 278Right-handed alpha
Helix 124
124
F
308 313Right-handed alpha
Helix 125
125
F
331 335Right-handed 310
Helix 126
126
F
340 344Right-handed 310
Helix 127
127
F
347 366Right-handed alpha
Back to top of page

There are 24 sheets in PDB entry 3OFU. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 12first strand
Strand 2
A
39 42parallel
Strand 3
A
48 51anti-parallel
Strand 4
A
303 307parallel
Strand 5
A
282 287anti-parallel
Strand 6
A
67 68anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
391 393anti-parallel
Strand 3
A
370 371anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 292first strand
Strand 2
A
297 298anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 380first strand
Strand 2
A
386 389anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
11 12first strand
Strand 2
B
39 42parallel
Strand 3
B
48 51anti-parallel
Strand 4
B
303 307parallel
Strand 5
B
282 287anti-parallel
Strand 6
B
67 68anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
133 135first strand
Strand 2
B
391 393anti-parallel
Strand 3
B
370 371anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 293first strand
Strand 2
B
296 298anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
378 380first strand
Strand 2
B
386 389anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
39 42parallel
Strand 3
C
48 51anti-parallel
Strand 4
C
303 307parallel
Strand 5
C
282 287anti-parallel
Strand 6
C
67 68anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
133 135first strand
Strand 2
C
391 393anti-parallel
Strand 3
C
370 371anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
291 293first strand
Strand 2
C
296 298anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
378 380first strand
Strand 2
C
386 389anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
11 12first strand
Strand 2
D
39 42parallel
Strand 3
D
48 51anti-parallel
Strand 4
D
303 307parallel
Strand 5
D
282 287anti-parallel
Strand 6
D
67 68anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
133 135first strand
Strand 2
D
391 394anti-parallel
Strand 3
D
369 371anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
291 293first strand
Strand 2
D
296 298anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
378 380first strand
Strand 2
D
386 389anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in Q sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
11 12first strand
Strand 2
E
39 42parallel
Strand 3
E
48 51anti-parallel
Strand 4
E
303 307parallel
Strand 5
E
282 287anti-parallel
Strand 6
E
67 68anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in R sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
133 135first strand
Strand 2
E
391 394anti-parallel
Strand 3
E
369 371anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in S sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
291 293first strand
Strand 2
E
296 298anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in T sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
378 380first strand
Strand 2
E
386 389anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in U sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
11 12first strand
Strand 2
F
39 42parallel
Strand 3
F
48 51anti-parallel
Strand 4
F
303 307parallel
Strand 5
F
282 287anti-parallel
Strand 6
F
67 68anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in V sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
133 135first strand
Strand 2
F
391 394anti-parallel
Strand 3
F
369 371anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in W sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
291 293first strand
Strand 2
F
296 298anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in X sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
378 379first strand
Strand 2
F
387 389anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il