Analysis of interatomic Contacts of Structural Units in PDB entry:
3OFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OFV entry

There are 3 chains in PDB entry 3OFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 1PHE 190
B
 SER -10PHE 190
C
 THR 1PHE 190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 3OFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 20Right-handed 310
Helix 2
2
A
21 34Right-handed alpha
Helix 3
3
A
42 44Right-handed 310
Helix 4
4
A
66 68Right-handed 310
Helix 5
5
A
69 81Right-handed alpha
Helix 6
6
A
84 86Right-handed 310
Helix 7
7
A
113 123Right-handed alpha
Helix 8
8
A
144 150Right-handed alpha
Helix 9
9
A
154 176Right-handed alpha
Helix 10
10
A
178 190Right-handed alpha
Helix 11
11
B
18 20Right-handed 310
Helix 12
12
B
21 34Right-handed alpha
Helix 13
13
B
42 44Right-handed 310
Helix 14
14
B
66 68Right-handed 310
Helix 15
15
B
69 81Right-handed alpha
Helix 16
16
B
84 86Right-handed 310
Helix 17
17
B
113 123Right-handed alpha
Helix 18
18
B
144 150Right-handed alpha
Helix 19
19
B
154 177Right-handed alpha
Helix 20
20
B
178 189Right-handed alpha
Helix 21
21
C
18 20Right-handed 310
Helix 22
22
C
21 34Right-handed alpha
Helix 23
23
C
42 44Right-handed 310
Helix 24
24
C
66 68Right-handed 310
Helix 25
25
C
69 81Right-handed alpha
Helix 26
26
C
84 86Right-handed 310
Helix 27
27
C
113 123Right-handed alpha
Helix 28
28
C
144 150Right-handed alpha
Helix 29
29
C
154 175Right-handed alpha
Helix 30
30
C
178 190Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 3OFV. Click on sheet of interest to get list of strands forming it: A, B, C,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
46 53anti-parallel
Strand 3
A
56 63anti-parallel
Strand 4
A
4 7parallel
Strand 5
A
88 94parallel
Strand 6
A
130 135parallel
Strand 7
A
102 106anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 41first strand
Strand 2
B
46 53anti-parallel
Strand 3
B
56 63anti-parallel
Strand 4
B
4 7parallel
Strand 5
B
88 94parallel
Strand 6
B
130 135parallel
Strand 7
B
102 106anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
39 41first strand
Strand 2
C
46 53anti-parallel
Strand 3
C
56 63anti-parallel
Strand 4
C
4 7parallel
Strand 5
C
88 94parallel
Strand 6
C
130 135parallel
Strand 7
C
102 106anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il