Analysis of interatomic Contacts of Structural Units in PDB entry:
3OG8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OG8 entry

There are 4 chains in PDB entry 3OG8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 803HIS 928
B
MET 801HIS 928
C
G 1 C 14
D
G 1 C 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 3OG8. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
837 840Right-handed 310
Helix 2
2
A
907 911Right-handed 310
Helix 3
3
A
919 928Right-handed alpha
Helix 4
4
B
835 840Right-handed alpha
Helix 5
5
B
907 911Right-handed 310
Helix 6
6
B
919 928Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 3OG8. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
816 819first strand
Strand 2
A
806 810anti-parallel
Strand 3
A
892 896anti-parallel
Strand 4
A
902 903anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
823 826first strand
Strand 2
A
830 833anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
842 846first strand
Strand 2
A
860 864anti-parallel
Strand 3
A
872 879anti-parallel
Strand 4
A
882 887anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
852 853first strand
Strand 2
A
856 857anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
816 819first strand
Strand 2
B
806 810anti-parallel
Strand 3
B
892 896anti-parallel
Strand 4
B
902 903anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
830 833first strand
Strand 2
B
823 826anti-parallel
Strand 3
B
916 917parallel
Back to list of sheets
Back to top of page

There are 3 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
842 845first strand
Strand 2
B
856 864anti-parallel
Strand 3
B
852 853anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
842 845first strand
Strand 2
B
856 864anti-parallel
Strand 3
B
872 879anti-parallel
Strand 4
B
882 887anti-parallel
Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il