Analysis of interatomic Contacts of Structural Units in PDB entry:
3OG9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OG9 entry

There are 2 chains in PDB entry 3OG9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 206
B
 MET 1LYS 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 3OG9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
29 37Right-handed alpha
Helix 2
2
A
50 54Right-handed 310
Helix 3
3
A
67 71Right-handed 310
Helix 4
4
A
72 95Right-handed alpha
Helix 5
5
A
97 100Right-handed 310
Helix 6
6
A
107 119Right-handed alpha
Helix 7
7
A
161 175Right-handed alpha
Helix 8
8
A
191 206Right-handed alpha
Helix 9
9
B
29 37Right-handed alpha
Helix 10
10
B
50 54Right-handed 310
Helix 11
11
B
67 71Right-handed 310
Helix 12
12
B
72 94Right-handed alpha
Helix 13
13
B
97 100Right-handed 310
Helix 14
14
B
107 119Right-handed alpha
Helix 15
15
B
161 175Right-handed alpha
Helix 16
16
B
191 205Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 3OG9. Click on sheet of interest to get list of strands forming it: A, B,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
42 45anti-parallel
Strand 3
A
16 19parallel
Strand 4
A
102 106parallel
Strand 5
A
126 130parallel
Strand 6
A
148 153parallel
Strand 7
A
178 183parallel
Back to list of sheets
Back to top of page

There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
4 7first strand
Strand 2
B
42 45anti-parallel
Strand 3
B
16 19parallel
Strand 4
B
102 106parallel
Strand 5
B
126 130parallel
Strand 6
B
148 153parallel
Strand 7
B
178 183parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il