Analysis of interatomic Contacts of Structural Units in PDB entry:
3OGO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OGO entry

There are 12 chains in PDB entry 3OGO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LEU 64
A
 VAL 68GLU 235
B
 LYS 3LEU 64
B
 VAL 68ILE 229
C
 SER 2LEU 64
C
 VAL 68LEU 231
D
 LYS 3LEU 64
D
 VAL 68THR 230
E
 GLN 2SER 116
F
 GLN 2SER 116
G
 MET 1SER 116
H
 GLN 2LYS 117
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 3OGO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 9Right-handed 310
Helix 2
2
A
37 39Right-handed 310
Helix 3
3
A
56 61Right-handed 310
Helix 4
4
A
68 72Right-handed 310
Helix 5
5
A
75 81Right-handed 310
Helix 6
6
A
82 87Right-handed alpha
Helix 7
7
B
3 9Right-handed 310
Helix 8
8
B
37 39Right-handed 310
Helix 9
9
B
56 61Right-handed 310
Helix 10
10
B
68 72Right-handed 310
Helix 11
11
B
75 81Right-handed 310
Helix 12
12
B
82 87Right-handed alpha
Helix 13
13
C
3 8Right-handed 310
Helix 14
14
C
56 61Right-handed 310
Helix 15
15
C
68 72Right-handed 310
Helix 16
16
C
75 81Right-handed 310
Helix 17
17
C
82 87Right-handed alpha
Helix 18
18
C
156 159Right-handed 310
Helix 19
19
D
3 8Right-handed 310
Helix 20
20
D
56 61Right-handed 310
Helix 21
21
D
68 72Right-handed 310
Helix 22
22
D
75 81Right-handed 310
Helix 23
23
D
82 87Right-handed alpha
Helix 24
24
D
156 159Right-handed 310
Helix 25
25
E
88 92Right-handed 310
Helix 26
26
F
88 92Right-handed 310
Helix 27
27
G
63 66Right-handed 310
Helix 28
28
G
88 92Right-handed 310
Helix 29
29
H
88 92Right-handed 310
Back to top of page

There are 16 sheets in PDB entry 3OGO. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 22first strand
Strand 2
A
25 36anti-parallel
Strand 3
A
41 48anti-parallel
Strand 4
A
217 227anti-parallel
Strand 5
A
199 208anti-parallel
Strand 6
A
149 155anti-parallel
Strand 7
A
160 170anti-parallel
Strand 8
A
176 187anti-parallel
Strand 9
A
92 100anti-parallel
Strand 10
A
105 115anti-parallel
Strand 11
A
118 128anti-parallel
Strand 12
A
12 22parallel
Back to list of sheets
Back to top of page

There are 12 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
12 22first strand
Strand 2
B
25 36anti-parallel
Strand 3
B
41 48anti-parallel
Strand 4
B
217 227anti-parallel
Strand 5
B
199 208anti-parallel
Strand 6
B
149 155anti-parallel
Strand 7
B
160 170anti-parallel
Strand 8
B
176 187anti-parallel
Strand 9
B
92 100anti-parallel
Strand 10
B
105 115anti-parallel
Strand 11
B
118 128anti-parallel
Strand 12
B
12 22parallel
Back to list of sheets
Back to top of page

There are 12 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 22first strand
Strand 2
C
25 36anti-parallel
Strand 3
C
41 48anti-parallel
Strand 4
C
217 227anti-parallel
Strand 5
C
199 208anti-parallel
Strand 6
C
149 155anti-parallel
Strand 7
C
160 170anti-parallel
Strand 8
C
176 187anti-parallel
Strand 9
C
92 100anti-parallel
Strand 10
C
105 115anti-parallel
Strand 11
C
118 128anti-parallel
Strand 12
C
12 22parallel
Back to list of sheets
Back to top of page

There are 12 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 22first strand
Strand 2
D
25 36anti-parallel
Strand 3
D
41 48anti-parallel
Strand 4
D
217 227anti-parallel
Strand 5
D
199 208anti-parallel
Strand 6
D
149 155anti-parallel
Strand 7
D
160 170anti-parallel
Strand 8
D
176 187anti-parallel
Strand 9
D
92 100anti-parallel
Strand 10
D
105 115anti-parallel
Strand 11
D
118 128anti-parallel
Strand 12
D
12 22parallel
Back to list of sheets
Back to top of page

There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
4 8first strand
Strand 2
E
19 26anti-parallel
Strand 3
E
79 84anti-parallel
Strand 4
E
69 74anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 13first strand
Strand 2
E
110 114parallel
Strand 3
E
93 100anti-parallel
Strand 4
E
35 40anti-parallel
Strand 5
E
47 52anti-parallel
Strand 6
E
59 61anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
12 13first strand
Strand 2
E
110 114parallel
Strand 3
E
93 100anti-parallel
Strand 4
E
104 106anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
4 8first strand
Strand 2
F
19 26anti-parallel
Strand 3
F
79 84anti-parallel
Strand 4
F
69 74anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 13first strand
Strand 2
F
110 114parallel
Strand 3
F
93 100anti-parallel
Strand 4
F
35 40anti-parallel
Strand 5
F
47 52anti-parallel
Strand 6
F
59 61anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
12 13first strand
Strand 2
F
110 114parallel
Strand 3
F
93 100anti-parallel
Strand 4
F
104 106anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
4 8first strand
Strand 2
G
19 26anti-parallel
Strand 3
G
79 84anti-parallel
Strand 4
G
69 74anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
12 13first strand
Strand 2
G
110 114parallel
Strand 3
G
93 100anti-parallel
Strand 4
G
35 40anti-parallel
Strand 5
G
47 52anti-parallel
Strand 6
G
59 61anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
G
12 13first strand
Strand 2
G
110 114parallel
Strand 3
G
93 100anti-parallel
Strand 4
G
104 106anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in N sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
4 8first strand
Strand 2
H
19 26anti-parallel
Strand 3
H
79 84anti-parallel
Strand 4
H
69 74anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in O sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
12 13first strand
Strand 2
H
110 114parallel
Strand 3
H
93 100anti-parallel
Strand 4
H
35 40anti-parallel
Strand 5
H
47 52anti-parallel
Strand 6
H
59 61anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in P sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
12 13first strand
Strand 2
H
110 114parallel
Strand 3
H
93 100anti-parallel
Strand 4
H
104 106anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il