Analysis of interatomic Contacts of Structural Units in PDB entry:
3OGR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OGR entry

There is 1 chain in PDB entry 3OGR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 38TYR 1023
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3OGR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
69 72Right-handed 310
Helix 2
2
A
74 76Right-handed 310
Helix 3
3
A
77 88Right-handed alpha
Helix 4
4
A
98 103Right-handed alpha
Helix 5
5
A
112 116Right-handed 310
Helix 6
6
A
117 128Right-handed alpha
Helix 7
7
A
143 148Right-handed 310
Helix 8
8
A
149 155Right-handed 310
Helix 9
9
A
163 184Right-handed alpha
Helix 10
10
A
185 189Right-handed 310
Helix 11
11
A
212 226Right-handed alpha
Helix 12
12
A
280 289Right-handed alpha
Helix 13
13
A
311 319Right-handed alpha
Helix 14
14
A
320 334Right-handed alpha
Helix 15
15
A
376 391Right-handed alpha
Helix 16
16
A
393 398Right-handed alpha
Helix 17
17
A
572 576Right-handed alpha
Helix 18
18
A
589 593Right-handed 310
Helix 19
19
A
676 680Right-handed 310
Helix 20
20
A
688 692Right-handed 310
Helix 21
21
A
722 727Right-handed 310
Helix 22
22
A
816 820Right-handed 310
Helix 23
23
A
865 870Right-handed alpha
Helix 24
24
A
878 882Right-handed 310
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There are 13 sheets in PDB entry 3OGR. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
53 55anti-parallel
Strand 3
A
58 60anti-parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
192 197first strand
Strand 2
A
130 136parallel
Strand 3
A
92 96parallel
Strand 4
A
62 67parallel
Strand 5
A
338 345parallel
Strand 6
A
295 300parallel
Strand 7
A
256 259parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 400first strand
Strand 2
A
414 420anti-parallel
Strand 3
A
426 432anti-parallel
Strand 4
A
470 479anti-parallel
Strand 5
A
482 487anti-parallel
Strand 6
A
512 517anti-parallel
Strand 7
A
547 552anti-parallel
Strand 8
A
538 541anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
441 443first strand
Strand 2
A
463 465anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 447first strand
Strand 2
A
454 456anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
490 496first strand
Strand 2
A
501 507anti-parallel
Strand 3
A
565 571parallel
Strand 4
A
558 562anti-parallel
Strand 5
A
530 533anti-parallel
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There are 5 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
578 579first strand
Strand 2
A
603 605anti-parallel
Strand 3
A
632 635anti-parallel
Strand 4
A
661 663anti-parallel
Strand 5
A
654 655anti-parallel
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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
609 616first strand
Strand 2
A
619 625anti-parallel
Strand 3
A
643 646parallel
Strand 4
A
649 651anti-parallel
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There are 5 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
683 686first strand
Strand 2
A
903 914anti-parallel
Strand 3
A
971 982anti-parallel
Strand 4
A
937 943anti-parallel
Strand 5
A
946 952anti-parallel
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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
767 772first strand
Strand 2
A
760 764anti-parallel
Strand 3
A
795 802anti-parallel
Strand 4
A
733 740anti-parallel
Strand 5
A
840 844anti-parallel
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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
780 787first strand
Strand 2
A
746 753anti-parallel
Strand 3
A
823 831anti-parallel
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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
920 921first strand
Strand 2
A
1001 1002anti-parallel
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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
960 963first strand
Strand 2
A
924 928anti-parallel
Strand 3
A
993 997anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il