Analysis of interatomic Contacts of Structural Units in PDB entry:
3OHT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OHT entry

There are 2 chains in PDB entry 3OHT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 5PRO 352
B
 GLU 5PRO 352
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 3OHT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
62 79Right-handed alpha
Helix 2
2
A
113 118Right-handed alpha
Helix 3
3
A
124 146Right-handed alpha
Helix 4
4
A
153 155Right-handed 310
Helix 5
5
A
191 220Right-handed alpha
Helix 6
6
A
228 241Right-handed alpha
Helix 7
7
A
244 249Right-handed alpha
Helix 8
8
A
253 261Right-handed alpha
Helix 9
9
A
270 275Right-handed alpha
Helix 10
10
A
279 290Right-handed alpha
Helix 11
11
A
299 306Right-handed alpha
Helix 12
12
A
307 310Right-handed 310
Helix 13
13
A
326 331Right-handed 310
Helix 14
14
A
334 349Right-handed alpha
Helix 15
15
B
62 79Right-handed alpha
Helix 16
16
B
113 118Right-handed alpha
Helix 17
17
B
124 145Right-handed alpha
Helix 18
18
B
153 155Right-handed 310
Helix 19
19
B
191 202Right-handed alpha
Helix 20
20
B
203 219Right-handed alpha
Helix 21
21
B
228 241Right-handed alpha
Helix 22
22
B
244 249Right-handed alpha
Helix 23
23
B
253 261Right-handed alpha
Helix 24
24
B
270 275Right-handed alpha
Helix 25
25
B
279 290Right-handed alpha
Helix 26
26
B
299 306Right-handed alpha
Helix 27
27
B
307 310Right-handed 310
Helix 28
28
B
326 331Right-handed 310
Helix 29
29
B
334 349Right-handed alpha
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There are 6 sheets in PDB entry 3OHT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 14first strand
Strand 2
A
17 22anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 34first strand
Strand 2
A
37 44anti-parallel
Strand 3
A
49 56anti-parallel
Strand 4
A
104 108anti-parallel
Strand 5
A
89 91anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
165 167anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 14first strand
Strand 2
B
17 22anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 34first strand
Strand 2
B
37 44anti-parallel
Strand 3
B
49 56anti-parallel
Strand 4
B
104 108anti-parallel
Strand 5
B
89 91anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 159first strand
Strand 2
B
165 167anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il