Analysis of interatomic Contacts of Structural Units in PDB entry:
3OID


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OID entry

There are 4 chains in PDB entry 3OID (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3LEU 251
B
 MET 1LEU 251
C
 ASN 4LEU 251
D
 ASN 4LEU 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 3OID. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 27Right-handed alpha
Helix 2
2
A
38 51Right-handed alpha
Helix 3
3
A
65 81Right-handed alpha
Helix 4
4
A
97 101Right-handed 310
Helix 5
5
A
102 114Right-handed alpha
Helix 6
6
A
114 130Right-handed alpha
Helix 7
7
A
143 145Right-handed 310
Helix 8
8
A
151 172Right-handed alpha
Helix 9
9
A
173 175Right-handed 310
Helix 10
10
A
189 195Right-handed 310
Helix 11
11
A
197 209Right-handed alpha
Helix 12
12
A
216 228Right-handed alpha
Helix 13
13
A
245 249Right-handed 310
Helix 14
14
B
14 27Right-handed alpha
Helix 15
15
B
38 51Right-handed alpha
Helix 16
16
B
65 80Right-handed alpha
Helix 17
17
B
97 101Right-handed 310
Helix 18
18
B
102 114Right-handed alpha
Helix 19
19
B
114 129Right-handed alpha
Helix 20
20
B
130 132Right-handed 310
Helix 21
21
B
143 145Right-handed 310
Helix 22
22
B
151 172Right-handed alpha
Helix 23
23
B
173 175Right-handed 310
Helix 24
24
B
189 195Right-handed 310
Helix 25
25
B
197 209Right-handed alpha
Helix 26
26
B
216 228Right-handed alpha
Helix 27
27
B
245 249Right-handed 310
Helix 28
28
C
14 27Right-handed alpha
Helix 29
29
C
38 51Right-handed alpha
Helix 30
30
C
65 81Right-handed alpha
Helix 31
31
C
97 101Right-handed 310
Helix 32
32
C
102 114Right-handed alpha
Helix 33
33
C
114 131Right-handed alpha
Helix 34
34
C
143 145Right-handed 310
Helix 35
35
C
151 172Right-handed alpha
Helix 36
36
C
173 175Right-handed 310
Helix 37
37
C
189 195Right-handed 310
Helix 38
38
C
197 209Right-handed alpha
Helix 39
39
C
216 228Right-handed alpha
Helix 40
40
C
245 249Right-handed 310
Helix 41
41
D
14 27Right-handed alpha
Helix 42
42
D
38 51Right-handed alpha
Helix 43
43
D
65 81Right-handed alpha
Helix 44
44
D
97 101Right-handed 310
Helix 45
45
D
102 114Right-handed alpha
Helix 46
46
D
114 129Right-handed alpha
Helix 47
47
D
130 132Right-handed 310
Helix 48
48
D
143 145Right-handed 310
Helix 49
49
D
151 172Right-handed alpha
Helix 50
50
D
173 175Right-handed 310
Helix 51
51
D
189 195Right-handed 310
Helix 52
52
D
197 209Right-handed alpha
Helix 53
53
D
216 228Right-handed alpha
Helix 54
54
D
245 249Right-handed 310
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There are 4 sheets in PDB entry 3OID. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 7 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
30 35parallel
Strand 3
A
6 9parallel
Strand 4
A
85 88parallel
Strand 5
A
134 141parallel
Strand 6
A
177 184parallel
Strand 7
A
239 242parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 60first strand
Strand 2
B
30 35parallel
Strand 3
B
6 9parallel
Strand 4
B
85 88parallel
Strand 5
B
134 141parallel
Strand 6
B
177 184parallel
Strand 7
B
239 242parallel
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There are 7 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 60first strand
Strand 2
C
30 35parallel
Strand 3
C
6 9parallel
Strand 4
C
85 88parallel
Strand 5
C
134 141parallel
Strand 6
C
177 184parallel
Strand 7
C
239 242parallel
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There are 7 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 60first strand
Strand 2
D
30 35parallel
Strand 3
D
6 9parallel
Strand 4
D
85 88parallel
Strand 5
D
134 141parallel
Strand 6
D
177 184parallel
Strand 7
D
239 242parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il