Analysis of interatomic Contacts of Structural Units in PDB entry:
3OIT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OIT entry

There are 2 chains in PDB entry 3OIT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 17SER 399
B
 SER 20THR 398
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3OIT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
45 54Right-handed alpha
Helix 2
2
A
59 72Right-handed alpha
Helix 3
3
A
83 90Right-handed alpha
Helix 4
4
A
91 94Right-handed 310
Helix 5
5
A
100 128Right-handed alpha
Helix 6
6
A
130 134Right-handed 310
Helix 7
7
A
149 159Right-handed alpha
Helix 8
8
A
172 174Right-handed 310
Helix 9
9
A
175 190Right-handed alpha
Helix 10
10
A
203 207Right-handed 310
Helix 11
11
A
216 225Right-handed alpha
Helix 12
12
A
279 296Right-handed alpha
Helix 13
13
A
297 300Right-handed 310
Helix 14
14
A
307 311Right-handed 310
Helix 15
15
A
319 331Right-handed alpha
Helix 16
16
A
337 348Right-handed alpha
Helix 17
17
A
350 352Right-handed 310
Helix 18
18
A
353 365Right-handed alpha
Helix 19
19
B
45 54Right-handed alpha
Helix 20
20
B
59 73Right-handed alpha
Helix 21
21
B
83 90Right-handed alpha
Helix 22
22
B
91 94Right-handed 310
Helix 23
23
B
100 128Right-handed alpha
Helix 24
24
B
130 134Right-handed 310
Helix 25
25
B
149 159Right-handed alpha
Helix 26
26
B
172 174Right-handed 310
Helix 27
27
B
175 190Right-handed alpha
Helix 28
28
B
203 207Right-handed 310
Helix 29
29
B
216 225Right-handed alpha
Helix 30
30
B
259 261Right-handed 310
Helix 31
31
B
279 297Right-handed alpha
Helix 32
32
B
298 301Right-handed 310
Helix 33
33
B
306 311Right-handed 310
Helix 34
34
B
319 331Right-handed alpha
Helix 35
35
B
337 348Right-handed alpha
Helix 36
36
B
350 352Right-handed 310
Helix 37
37
B
353 366Right-handed alpha
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There are 6 sheets in PDB entry 3OIT. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 170first strand
Strand 2
A
136 141parallel
Strand 3
A
195 202parallel
Strand 4
A
228 235anti-parallel
Strand 5
A
28 35anti-parallel
Strand 6
A
246 255anti-parallel
Strand 7
A
389 397anti-parallel
Strand 8
A
378 385anti-parallel
Strand 9
A
312 315parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
77 80anti-parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 147first strand
Strand 2
B
263 267anti-parallel
Strand 3
B
272 276anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 276first strand
Strand 2
A
263 267anti-parallel
Strand 3
B
146 147anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 170first strand
Strand 2
B
136 141parallel
Strand 3
B
195 202parallel
Strand 4
B
228 236anti-parallel
Strand 5
B
27 35anti-parallel
Strand 6
B
246 255anti-parallel
Strand 7
B
389 397anti-parallel
Strand 8
B
378 385anti-parallel
Strand 9
B
312 315parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 42first strand
Strand 2
B
77 79anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il