Analysis of interatomic Contacts of Structural Units in PDB entry:
3OIY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OIY entry

There are 2 chains in PDB entry 3OIY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 58ARG 534
B
 GLU 59ARG 534
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 3OIY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
60 76Right-handed alpha
Helix 2
2
A
80 91Right-handed alpha
Helix 3
3
A
105 119Right-handed alpha
Helix 4
4
A
130 145Right-handed alpha
Helix 5
5
A
159 173Right-handed alpha
Helix 6
6
A
182 188Right-handed alpha
Helix 7
7
A
188 193Right-handed alpha
Helix 8
8
A
204 211Right-handed alpha
Helix 9
9
A
211 222Right-handed alpha
Helix 10
10
A
225 239Right-handed alpha
Helix 11
11
A
267 275Right-handed alpha
Helix 12
12
A
297 309Right-handed alpha
Helix 13
13
A
318 332Right-handed alpha
Helix 14
14
A
342 352Right-handed alpha
Helix 15
15
A
461 470Right-handed alpha
Helix 16
16
A
471 473Right-handed 310
Helix 17
17
A
491 507Right-handed alpha
Helix 18
18
A
514 516Right-handed 310
Helix 19
19
A
517 534Right-handed alpha
Helix 20
20
B
60 76Right-handed alpha
Helix 21
21
B
80 91Right-handed alpha
Helix 22
22
B
105 119Right-handed alpha
Helix 23
23
B
130 145Right-handed alpha
Helix 24
24
B
159 173Right-handed alpha
Helix 25
25
B
182 188Right-handed alpha
Helix 26
26
B
188 193Right-handed alpha
Helix 27
27
B
204 210Right-handed alpha
Helix 28
28
B
211 222Right-handed alpha
Helix 29
29
B
225 238Right-handed alpha
Helix 30
30
B
267 274Right-handed alpha
Helix 31
31
B
297 309Right-handed alpha
Helix 32
32
B
318 332Right-handed alpha
Helix 33
33
B
342 352Right-handed alpha
Helix 34
34
B
461 471Right-handed alpha
Helix 35
35
B
491 507Right-handed alpha
Helix 36
36
B
514 516Right-handed 310
Helix 37
37
B
517 534Right-handed alpha
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There are 7 sheets in PDB entry 3OIY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
252 255parallel
Strand 3
A
199 202parallel
Strand 4
A
124 128parallel
Strand 5
A
177 181parallel
Strand 6
A
151 153parallel
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There are 7 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 338first strand
Strand 2
A
357 361parallel
Strand 3
A
312 316parallel
Strand 4
A
380 384parallel
Strand 5
A
483 488parallel
Strand 6
A
288 293parallel
Strand 7
A
510 512parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 476first strand
Strand 2
A
479 480anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 97first strand
Strand 2
B
252 255parallel
Strand 3
B
199 202parallel
Strand 4
B
124 128parallel
Strand 5
B
177 181parallel
Strand 6
B
151 153parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 260first strand
Strand 2
B
279 280parallel
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There are 7 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 338first strand
Strand 2
B
357 361parallel
Strand 3
B
312 316parallel
Strand 4
B
380 384parallel
Strand 5
B
483 488parallel
Strand 6
B
288 293parallel
Strand 7
B
510 512parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
475 476first strand
Strand 2
B
479 480anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il