Analysis of interatomic Contacts of Structural Units in PDB entry:
3OJA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OJA entry

There are 2 chains in PDB entry 3OJA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 23GLY 509
B
 PRO 138ASN 709
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3OJA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
43 50Right-handed alpha
Helix 2
2
A
54 58Right-handed 310
Helix 3
3
A
72 77Right-handed 310
Helix 4
4
A
156 160Right-handed 310
Helix 5
5
A
161 166Right-handed 310
Helix 6
6
A
184 190Right-handed 310
Helix 7
7
A
229 236Right-handed 310
Helix 8
8
A
272 281Right-handed alpha
Helix 9
9
A
283 298Right-handed alpha
Helix 10
10
A
323 338Right-handed alpha
Helix 11
11
A
347 370Right-handed alpha
Helix 12
12
A
375 416Right-handed alpha
Helix 13
13
A
429 509Right-handed alpha
Helix 14
14
B
174 178Right-handed 310
Helix 15
15
B
195 201Right-handed alpha
Helix 16
16
B
314 318Right-handed 310
Helix 17
17
B
374 380Right-handed 310
Helix 18
18
B
399 402Right-handed 310
Helix 19
19
B
443 445Right-handed 310
Helix 20
20
B
446 451Right-handed alpha
Helix 21
21
B
486 493Right-handed alpha
Helix 22
22
B
525 543Right-handed alpha
Helix 23
23
B
582 620Right-handed alpha
Helix 24
24
B
629 707Right-handed alpha
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There are 12 sheets in PDB entry 3OJA. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 12 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 30first strand
Strand 2
A
33 37anti-parallel
Strand 3
A
60 62parallel
Strand 4
A
84 86parallel
Strand 5
A
106 108parallel
Strand 6
A
125 127parallel
Strand 7
A
145 148parallel
Strand 8
A
168 172parallel
Strand 9
A
195 197parallel
Strand 10
A
217 219parallel
Strand 11
A
240 242parallel
Strand 12
A
263 265parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 97first strand
Strand 2
A
113 119parallel
Strand 3
A
136 138parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 182first strand
Strand 2
A
205 207parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
250 251parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 313first strand
Strand 2
A
316 318anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 143first strand
Strand 2
B
169 170parallel
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There are 15 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
154 156first strand
Strand 2
B
182 185parallel
Strand 3
B
206 208parallel
Strand 4
B
230 232parallel
Strand 5
B
254 256parallel
Strand 6
B
278 280parallel
Strand 7
B
302 304parallel
Strand 8
B
323 325parallel
Strand 9
B
342 344parallel
Strand 10
B
363 365parallel
Strand 11
B
385 387parallel
Strand 12
B
409 411parallel
Strand 13
B
432 434parallel
Strand 14
B
455 457parallel
Strand 15
B
476 478parallel
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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 161first strand
Strand 2
B
189 190parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
192 193first strand
Strand 2
B
216 217parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 335first strand
Strand 2
B
352 354parallel
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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
395 397first strand
Strand 2
B
419 421parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
484 485first strand
Strand 2
B
518 521parallel
Strand 3
B
513 515anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il