Analysis of interatomic Contacts of Structural Units in PDB entry:
3OJC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OJC entry

There are 4 chains in PDB entry 3OJC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 2GLN 231
B
 MSE 2GLN 231
C
 MSE 2GLN 231
D
 MSE 2GLN 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 56 helices in PDB entry 3OJC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 32Right-handed alpha
Helix 2
2
A
45 55Right-handed alpha
Helix 3
3
A
57 76Right-handed alpha
Helix 4
4
A
85 89Right-handed 310
Helix 5
5
A
90 99Right-handed alpha
Helix 6
6
A
104 116Right-handed alpha
Helix 7
7
A
126 132Right-handed alpha
Helix 8
8
A
135 142Right-handed alpha
Helix 9
9
A
151 165Right-handed alpha
Helix 10
10
A
166 169Right-handed 310
Helix 11
11
A
172 189Right-handed alpha
Helix 12
12
A
198 204Right-handed 310
Helix 13
13
A
206 210Right-handed 310
Helix 14
14
A
217 231Right-handed alpha
Helix 15
15
B
12 32Right-handed alpha
Helix 16
16
B
45 55Right-handed alpha
Helix 17
17
B
57 76Right-handed alpha
Helix 18
18
B
85 89Right-handed 310
Helix 19
19
B
90 99Right-handed alpha
Helix 20
20
B
104 116Right-handed alpha
Helix 21
21
B
126 132Right-handed alpha
Helix 22
22
B
135 142Right-handed alpha
Helix 23
23
B
151 165Right-handed alpha
Helix 24
24
B
166 169Right-handed 310
Helix 25
25
B
172 189Right-handed alpha
Helix 26
26
B
198 204Right-handed 310
Helix 27
27
B
206 210Right-handed 310
Helix 28
28
B
217 230Right-handed alpha
Helix 29
29
C
12 32Right-handed alpha
Helix 30
30
C
45 55Right-handed alpha
Helix 31
31
C
57 76Right-handed alpha
Helix 32
32
C
85 89Right-handed 310
Helix 33
33
C
90 99Right-handed alpha
Helix 34
34
C
104 116Right-handed alpha
Helix 35
35
C
126 132Right-handed alpha
Helix 36
36
C
135 144Right-handed alpha
Helix 37
37
C
151 165Right-handed alpha
Helix 38
38
C
166 169Right-handed 310
Helix 39
39
C
172 189Right-handed alpha
Helix 40
40
C
198 204Right-handed 310
Helix 41
41
C
206 210Right-handed 310
Helix 42
42
C
217 231Right-handed alpha
Helix 43
43
D
12 32Right-handed alpha
Helix 44
44
D
45 55Right-handed alpha
Helix 45
45
D
57 76Right-handed alpha
Helix 46
46
D
85 89Right-handed 310
Helix 47
47
D
90 99Right-handed alpha
Helix 48
48
D
104 116Right-handed alpha
Helix 49
49
D
126 132Right-handed alpha
Helix 50
50
D
135 144Right-handed alpha
Helix 51
51
D
151 165Right-handed alpha
Helix 52
52
D
166 169Right-handed 310
Helix 53
53
D
172 189Right-handed alpha
Helix 54
54
D
199 205Right-handed alpha
Helix 55
55
D
206 210Right-handed 310
Helix 56
56
D
217 231Right-handed alpha
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There are 6 sheets in PDB entry 3OJC. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
5 9parallel
Strand 3
A
39 43parallel
Strand 4
C
39 43anti-parallel
Strand 5
C
5 9parallel
Strand 6
C
79 82parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
120 124parallel
Strand 3
A
194 196parallel
Strand 4
A
214 216parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
79 82first strand
Strand 2
B
5 8parallel
Strand 3
B
39 43parallel
Strand 4
D
39 43anti-parallel
Strand 5
D
5 9parallel
Strand 6
D
79 82parallel
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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 148first strand
Strand 2
B
120 124parallel
Strand 3
B
194 196parallel
Strand 4
B
214 216parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
146 148first strand
Strand 2
C
120 124parallel
Strand 3
C
194 196parallel
Strand 4
C
214 216parallel
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There are 4 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
146 148first strand
Strand 2
D
120 124parallel
Strand 3
D
194 196parallel
Strand 4
D
214 216parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il