Analysis of interatomic Contacts of Structural Units in PDB entry:
3OJJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OJJ entry

There are 4 chains in PDB entry 3OJJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4GLY 358
B
 GLU 4GLY 362
C
 GLU 4SER 356
D
 GLU 4LEU 144
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 3OJJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
27 36Right-handed alpha
Helix 2
2
A
83 97Right-handed alpha
Helix 3
3
A
162 173Right-handed alpha
Helix 4
4
A
221 235Right-handed alpha
Helix 5
5
A
237 239Right-handed 310
Helix 6
6
A
301 307Right-handed alpha
Helix 7
7
A
328 334Right-handed alpha
Helix 8
8
B
27 36Right-handed alpha
Helix 9
9
B
83 97Right-handed alpha
Helix 10
10
B
162 173Right-handed alpha
Helix 11
11
B
221 235Right-handed alpha
Helix 12
12
B
237 239Right-handed 310
Helix 13
13
B
301 307Right-handed alpha
Helix 14
14
B
328 334Right-handed alpha
Helix 15
15
C
27 36Right-handed alpha
Helix 16
16
C
84 97Right-handed alpha
Helix 17
17
C
162 173Right-handed alpha
Helix 18
18
C
221 235Right-handed alpha
Helix 19
19
C
237 239Right-handed 310
Helix 20
20
C
301 307Right-handed alpha
Helix 21
21
C
328 335Right-handed alpha
Helix 22
22
D
27 36Right-handed alpha
Helix 23
23
D
84 97Right-handed alpha
Helix 24
24
D
162 173Right-handed alpha
Helix 25
25
D
221 235Right-handed alpha
Helix 26
26
D
237 239Right-handed 310
Helix 27
27
D
301 307Right-handed alpha
Helix 28
28
D
328 334Right-handed alpha
Helix 29
29
D
355 357Right-handed 310
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There are 13 sheets in PDB entry 3OJJ. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 46first strand
Strand 2
A
50 54anti-parallel
Strand 3
A
64 68anti-parallel
Strand 4
A
15 25parallel
Strand 5
A
73 81anti-parallel
Strand 6
A
125 129parallel
Strand 7
A
115 119anti-parallel
Strand 8
A
101 104anti-parallel
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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
241 247first strand
Strand 2
A
254 259anti-parallel
Strand 3
A
265 270anti-parallel
Strand 4
A
211 218parallel
Strand 5
A
152 160anti-parallel
Strand 6
A
202 206parallel
Strand 7
A
188 194anti-parallel
Strand 8
A
176 182anti-parallel
Strand 9
A
283 286parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 340first strand
Strand 2
A
351 352anti-parallel
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There are 8 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 46first strand
Strand 2
B
50 54anti-parallel
Strand 3
B
64 68anti-parallel
Strand 4
B
15 25parallel
Strand 5
B
73 81anti-parallel
Strand 6
B
125 129parallel
Strand 7
B
115 119anti-parallel
Strand 8
B
101 104anti-parallel
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There are 9 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
241 247first strand
Strand 2
B
254 259anti-parallel
Strand 3
B
265 270anti-parallel
Strand 4
B
211 218parallel
Strand 5
B
152 160anti-parallel
Strand 6
B
202 206parallel
Strand 7
B
188 194anti-parallel
Strand 8
B
176 182anti-parallel
Strand 9
B
283 286parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 340first strand
Strand 2
B
351 352anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
359 361first strand
Strand 2
D
359 361anti-parallel
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There are 8 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
42 46first strand
Strand 2
C
50 54anti-parallel
Strand 3
C
64 68anti-parallel
Strand 4
C
15 25parallel
Strand 5
C
73 81anti-parallel
Strand 6
C
125 129parallel
Strand 7
C
115 119anti-parallel
Strand 8
C
101 104anti-parallel
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There are 9 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
241 247first strand
Strand 2
C
254 259anti-parallel
Strand 3
C
265 270anti-parallel
Strand 4
C
211 218parallel
Strand 5
C
152 160anti-parallel
Strand 6
C
202 206parallel
Strand 7
C
188 194anti-parallel
Strand 8
C
176 182anti-parallel
Strand 9
C
283 286parallel
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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
339 340first strand
Strand 2
C
351 352anti-parallel
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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
42 46first strand
Strand 2
D
50 54anti-parallel
Strand 3
D
64 68anti-parallel
Strand 4
D
15 25parallel
Strand 5
D
73 81anti-parallel
Strand 6
D
125 129parallel
Strand 7
D
115 119anti-parallel
Strand 8
D
101 104anti-parallel
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There are 9 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
241 247first strand
Strand 2
D
254 259anti-parallel
Strand 3
D
265 270anti-parallel
Strand 4
D
211 218parallel
Strand 5
D
152 160anti-parallel
Strand 6
D
202 206parallel
Strand 7
D
188 194anti-parallel
Strand 8
D
176 182anti-parallel
Strand 9
D
283 286parallel
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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
339 340first strand
Strand 2
D
351 352anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il