Analysis of interatomic Contacts of Structural Units in PDB entry:
3OJM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OJM entry

There are 2 chains in PDB entry 3OJM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 10SER 154
B
 LYS 151GLN 361
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 3OJM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
21 25Right-handed 310
Helix 2
2
A
95 98Right-handed 310
Helix 3
3
A
117 121Right-handed 310
Helix 4
4
A
134 138Right-handed 310
Helix 5
5
B
158 163Right-handed 310
Helix 6
6
B
199 203Right-handed 310
Helix 7
7
B
211 213Right-handed 310
Helix 8
8
B
222 226Right-handed 310
Helix 9
9
B
331 335Right-handed 310
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There are 9 sheets in PDB entry 3OJM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 49first strand
Strand 2
A
36 40anti-parallel
Strand 3
A
28 31anti-parallel
Strand 4
A
147 150anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 65first strand
Strand 2
A
68 73anti-parallel
Strand 3
A
100 104anti-parallel
Strand 4
A
110 114anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
79 82first strand
Strand 2
A
88 91anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
152 156first strand
Strand 2
B
181 184anti-parallel
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There are 5 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 170first strand
Strand 2
B
238 249parallel
Strand 3
B
227 235anti-parallel
Strand 4
B
188 193anti-parallel
Strand 5
B
196 197anti-parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 178first strand
Strand 2
B
215 218anti-parallel
Strand 3
B
208 210anti-parallel
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There are 2 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
257 258first strand
Strand 2
B
280 281anti-parallel
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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 269first strand
Strand 2
B
347 358parallel
Strand 3
B
336 344anti-parallel
Strand 4
B
287 293anti-parallel
Strand 5
B
309 314anti-parallel
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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
274 277first strand
Strand 2
B
324 327anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il