Analysis of interatomic Contacts of Structural Units in PDB entry:
3OJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OJO entry

There are 2 chains in PDB entry 3OJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ILE 418
B
 SER 1ILE 418
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 3OJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 22Right-handed alpha
Helix 2
2
A
32 41Right-handed alpha
Helix 3
3
A
50 61Right-handed alpha
Helix 4
4
A
94 105Right-handed alpha
Helix 5
5
A
106 108Right-handed 310
Helix 6
6
A
123 128Right-handed alpha
Helix 7
7
A
128 135Right-handed alpha
Helix 8
8
A
157 165Right-handed alpha
Helix 9
9
A
173 185Right-handed alpha
Helix 10
10
A
197 228Right-handed alpha
Helix 11
11
A
231 240Right-handed alpha
Helix 12
12
A
274 286Right-handed alpha
Helix 13
13
A
286 302Right-handed alpha
Helix 14
14
A
324 336Right-handed alpha
Helix 15
15
A
357 362Right-handed alpha
Helix 16
16
A
373 377Right-handed 310
Helix 17
17
A
380 385Right-handed 310
Helix 18
18
A
413 417Right-handed 310
Helix 19
19
B
11 22Right-handed alpha
Helix 20
20
B
32 41Right-handed alpha
Helix 21
21
B
50 61Right-handed alpha
Helix 22
22
B
94 105Right-handed alpha
Helix 23
23
B
106 108Right-handed 310
Helix 24
24
B
123 128Right-handed alpha
Helix 25
25
B
128 135Right-handed alpha
Helix 26
26
B
157 165Right-handed alpha
Helix 27
27
B
173 185Right-handed alpha
Helix 28
28
B
197 228Right-handed alpha
Helix 29
29
B
231 240Right-handed alpha
Helix 30
30
B
270 273Right-handed 310
Helix 31
31
B
274 302Right-handed alpha
Helix 32
32
B
324 336Right-handed alpha
Helix 33
33
B
356 362Right-handed alpha
Helix 34
34
B
373 377Right-handed 310
Helix 35
35
B
380 385Right-handed 310
Helix 36
36
B
413 417Right-handed 310
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There are 4 sheets in PDB entry 3OJO. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 67first strand
Strand 2
A
25 29parallel
Strand 3
A
2 6parallel
Strand 4
A
75 78parallel
Strand 5
A
112 116parallel
Strand 6
A
144 148parallel
Strand 7
A
167 171anti-parallel
Strand 8
A
192 196parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 344first strand
Strand 2
A
306 310parallel
Strand 3
A
366 369parallel
Strand 4
A
391 394parallel
Strand 5
A
407 410parallel
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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 67first strand
Strand 2
B
25 29parallel
Strand 3
B
2 6parallel
Strand 4
B
75 78parallel
Strand 5
B
113 116parallel
Strand 6
B
145 148parallel
Strand 7
B
167 171anti-parallel
Strand 8
B
192 196parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
340 344first strand
Strand 2
B
306 310parallel
Strand 3
B
366 369parallel
Strand 4
B
391 394parallel
Strand 5
B
407 409parallel
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