Analysis of interatomic Contacts of Structural Units in PDB entry:
3OJV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3OJV entry

There are 4 chains in PDB entry 3OJV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 21	SER 153
B	GLY 21	SER 153
C	ASN 147	LEU 359
D	ASN 147	LEU 359

There are 14 helices in PDB entry 3OJV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	95	98	Right-handed 310
Helix 2	2	A	134	138	Right-handed 310
Helix 3	3	B	95	98	Right-handed 310
Helix 4	4	B	134	138	Right-handed 310
Helix 5	5	C	158	162	Right-handed 310
Helix 6	6	C	198	202	Right-handed 310
Helix 7	7	C	210	212	Right-handed 310
Helix 8	8	C	221	225	Right-handed 310
Helix 9	9	C	319	324	Right-handed alpha
Helix 10	10	D	158	162	Right-handed 310
Helix 11	11	D	198	202	Right-handed 310
Helix 12	12	D	210	212	Right-handed 310
Helix 13	13	D	221	225	Right-handed 310
Helix 14	14	D	319	324	Right-handed alpha

There are 18 sheets in PDB entry 3OJV. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	31	first strand
Strand 2	A	147	150	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	37	40	first strand
Strand 2	A	46	49	anti-parallel

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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	65	first strand
Strand 2	A	68	73	anti-parallel
Strand 3	A	100	104	anti-parallel
Strand 4	A	110	114	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	82	first strand
Strand 2	A	88	91	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	147	150	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	37	40	first strand
Strand 2	B	46	49	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	65	first strand
Strand 2	B	68	73	anti-parallel
Strand 3	B	100	104	anti-parallel
Strand 4	B	110	114	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	82	first strand
Strand 2	B	88	91	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	155	first strand
Strand 2	C	180	183	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	165	169	first strand
Strand 2	C	237	248	parallel
Strand 3	C	226	234	anti-parallel
Strand 4	C	187	192	anti-parallel
Strand 5	C	195	196	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	174	177	first strand
Strand 2	C	214	217	anti-parallel
Strand 3	C	207	209	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	257	first strand
Strand 2	C	279	280	anti-parallel

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There are 5 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	267	first strand
Strand 2	C	349	358	parallel
Strand 3	C	337	344	anti-parallel
Strand 4	C	286	291	anti-parallel
Strand 5	C	309	313	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	155	first strand
Strand 2	D	180	183	anti-parallel

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There are 5 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	165	169	first strand
Strand 2	D	237	248	parallel
Strand 3	D	226	234	anti-parallel
Strand 4	D	187	192	anti-parallel
Strand 5	D	195	196	anti-parallel

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There are 3 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	174	177	first strand
Strand 2	D	214	217	anti-parallel
Strand 3	D	207	209	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	256	257	first strand
Strand 2	D	279	280	anti-parallel

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There are 5 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	267	first strand
Strand 2	D	349	358	parallel
Strand 3	D	337	344	anti-parallel
Strand 4	D	286	291	anti-parallel
Strand 5	D	309	313	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3OJV

Analysis of interatomic Contacts of Structural Units in PDB entry:
3OJV