Analysis of interatomic Contacts of Structural Units in PDB entry:
3OJW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OJW entry

There is 1 chain in PDB entry 3OJW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 66SER 678
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 3OJW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
68 76Right-handed alpha
Helix 2
2
A
89 102Right-handed alpha
Helix 3
3
A
103 106Right-handed 310
Helix 4
4
A
113 117Right-handed 310
Helix 5
5
A
118 128Right-handed 310
Helix 6
6
A
141 143Right-handed 310
Helix 7
7
A
149 159Right-handed alpha
Helix 8
8
A
182 195Right-handed alpha
Helix 9
9
A
211 232Right-handed alpha
Helix 10
10
A
254 258Right-handed 310
Helix 11
11
A
327 338Right-handed alpha
Helix 12
12
A
367 374Right-handed alpha
Helix 13
13
A
382 391Right-handed alpha
Helix 14
14
A
395 407Right-handed alpha
Helix 15
15
A
409 420Right-handed alpha
Helix 16
16
A
426 434Right-handed alpha
Helix 17
17
A
440 448Right-handed alpha
Helix 18
18
A
488 496Right-handed alpha
Helix 19
19
A
537 553Right-handed alpha
Helix 20
20
A
575 585Right-handed alpha
Helix 21
21
A
604 612Right-handed alpha
Helix 22
22
A
612 622Right-handed alpha
Helix 23
23
A
633 652Right-handed alpha
Helix 24
24
A
655 669Right-handed alpha
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There are 6 sheets in PDB entry 3OJW. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
80 85parallel
Strand 3
A
132 140parallel
Strand 4
A
144 145anti-parallel
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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 112first strand
Strand 2
A
80 85parallel
Strand 3
A
132 140parallel
Strand 4
A
167 174parallel
Strand 5
A
198 207parallel
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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
245 249first strand
Strand 2
A
345 350anti-parallel
Strand 3
A
365 366anti-parallel
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There are 6 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
454 457first strand
Strand 2
A
319 322anti-parallel
Strand 3
A
508 514anti-parallel
Strand 4
A
282 291anti-parallel
Strand 5
A
300 306anti-parallel
Strand 6
A
468 474anti-parallel
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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
477 479first strand
Strand 2
A
485 487anti-parallel
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There are 5 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 595first strand
Strand 2
A
560 566parallel
Strand 3
A
528 533parallel
Strand 4
A
626 631parallel
Strand 5
A
672 676parallel
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