Analysis of interatomic Contacts of Structural Units in PDB entry:
3OJY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3OJY entry

Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 3OJY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	GLN 552
B	MET 7	ASP 363
B	MET 365	CYS 536
C	ILE 13	VAL 180

There are 34 helices in PDB entry 3OJY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	80	84	Right-handed 310
Helix 2	2	A	118	123	Right-handed alpha
Helix 3	3	A	162	165	Right-handed 310
Helix 4	4	A	170	173	Right-handed 310
Helix 5	5	A	202	211	Right-handed alpha
Helix 6	6	A	246	250	Right-handed 310
Helix 7	7	A	281	290	Right-handed alpha
Helix 8	8	A	296	308	Right-handed alpha
Helix 9	9	A	329	335	Right-handed alpha
Helix 10	10	A	338	349	Right-handed alpha
Helix 11	11	A	377	384	Right-handed alpha
Helix 12	12	A	412	420	Right-handed alpha
Helix 13	13	A	421	423	Right-handed 310
Helix 14	14	A	435	441	Right-handed 310
Helix 15	15	A	446	464	Right-handed alpha
Helix 16	16	A	465	469	Right-handed 310
Helix 17	17	B	81	85	Right-handed 310
Helix 18	18	B	117	121	Right-handed 310
Helix 19	19	B	182	187	Right-handed alpha
Helix 20	20	B	221	230	Right-handed alpha
Helix 21	21	B	260	268	Right-handed alpha
Helix 22	22	B	275	287	Right-handed alpha
Helix 23	23	B	308	312	Right-handed alpha
Helix 24	24	B	317	325	Right-handed alpha
Helix 25	25	B	354	359	Right-handed alpha
Helix 26	26	B	394	404	Right-handed alpha
Helix 27	27	B	417	420	Right-handed 310
Helix 28	28	B	427	446	Right-handed alpha
Helix 29	29	B	447	451	Right-handed 310
Helix 30	30	B	477	481	Right-handed 310
Helix 31	31	C	40	45	Right-handed alpha
Helix 32	32	C	46	50	Right-handed 310
Helix 33	33	C	138	150	Right-handed alpha
Helix 34	34	C	155	157	Right-handed 310

There are 22 sheets in PDB entry 3OJY. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	11	first strand
Strand 2	A	33	35	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	30	first strand
Strand 2	A	49	53	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	71	first strand
Strand 2	A	78	79	anti-parallel

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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	124	127	first strand
Strand 2	A	132	136	anti-parallel

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There are 2 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	148	151	first strand
Strand 2	A	175	178	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	159	161	first strand
Strand 2	A	166	168	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	187	first strand
Strand 2	A	257	273	anti-parallel
Strand 3	A	310	328	anti-parallel
Strand 4	A	386	391	anti-parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	200	first strand
Strand 2	A	257	273	anti-parallel
Strand 3	A	310	328	anti-parallel
Strand 4	A	425	433	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	478	481	first strand
Strand 2	A	484	487	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	529	first strand
Strand 2	A	549	552	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	13	first strand
Strand 2	B	35	37	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	32	first strand
Strand 2	B	51	55	anti-parallel

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There are 3 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	40	first strand
Strand 2	B	466	470	parallel
Strand 3	B	459	463	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	79	80	anti-parallel

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There are 2 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	125	first strand
Strand 2	B	132	135	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	151	first strand
Strand 2	B	154	158	anti-parallel

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There are 5 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	167	first strand
Strand 2	B	245	252	anti-parallel
Strand 3	B	289	298	anti-parallel
Strand 4	B	407	415	anti-parallel
Strand 5	B	210	211	anti-parallel

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There are 4 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	175	180	first strand
Strand 2	B	236	243	anti-parallel
Strand 3	B	301	307	anti-parallel
Strand 4	B	366	372	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	476	first strand
Strand 2	B	482	483	anti-parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	506	509	first strand
Strand 2	B	531	534	anti-parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	161	first strand
Strand 2	C	29	37	anti-parallel
Strand 3	C	54	60	anti-parallel
Strand 4	C	63	72	anti-parallel
Strand 5	C	75	85	anti-parallel
Strand 6	C	176	177	parallel

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There are 8 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	159	161	first strand
Strand 2	C	29	37	anti-parallel
Strand 3	C	125	132	anti-parallel
Strand 4	C	115	122	anti-parallel
Strand 5	C	103	110	anti-parallel
Strand 6	C	91	94	anti-parallel
Strand 7	C	75	85	anti-parallel
Strand 8	C	176	177	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3OJY

Analysis of interatomic Contacts of Structural Units in PDB entry:
3OJY