Analysis of interatomic Contacts of Structural Units in PDB entry:
3OLM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OLM entry

There are 2 chains in PDB entry 3OLM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 385ILE 804
D
 MET 1ARG 74
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 3OLM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
429 444Right-handed alpha
Helix 2
2
A
445 449Right-handed 310
Helix 3
3
A
463 475Right-handed alpha
Helix 4
4
A
476 481Right-handed alpha
Helix 5
5
A
501 512Right-handed alpha
Helix 6
6
A
513 517Right-handed 310
Helix 7
7
A
533 538Right-handed 310
Helix 8
8
A
540 558Right-handed alpha
Helix 9
9
A
567 575Right-handed alpha
Helix 10
10
A
580 588Right-handed alpha
Helix 11
11
A
588 599Right-handed alpha
Helix 12
12
A
629 633Right-handed 310
Helix 13
13
A
639 653Right-handed alpha
Helix 14
14
A
656 669Right-handed alpha
Helix 15
15
A
672 677Right-handed alpha
Helix 16
16
A
680 689Right-handed alpha
Helix 17
17
A
695 702Right-handed alpha
Helix 18
18
A
712 725Right-handed alpha
Helix 19
19
A
726 739Right-handed alpha
Helix 20
20
A
747 750Right-handed 310
Helix 21
21
A
776 778Right-handed 310
Helix 22
22
A
788 803Right-handed alpha
Helix 23
23
D
22 35Right-handed alpha
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There are 7 sheets in PDB entry 3OLM. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
405 407first strand
Strand 2
A
412 414anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
455 460first strand
Strand 2
A
484 489parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
519 521first strand
Strand 2
A
529 531anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
612 617first strand
Strand 2
A
620 625anti-parallel
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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
703 706first strand
Strand 2
A
760 763parallel
Strand 3
A
780 782parallel
Strand 4
A
773 775anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
752 753first strand
Strand 2
A
756 757anti-parallel
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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
12 16first strand
Strand 2
D
2 6anti-parallel
Strand 3
D
66 71parallel
Strand 4
D
41 44anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il