Analysis of interatomic Contacts of Structural Units in PDB entry:
3OM5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 3OM5 entry

There are 4 chains in PDB entry 3OM5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 34	VAL 481
B	SER 34	VAL 481
C	SER 34	VAL 481
D	SER 34	VAL 481

There are 54 helices in PDB entry 3OM5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	47	53	Right-handed alpha
Helix 2	2	A	53	59	Right-handed alpha
Helix 3	3	A	69	73	Right-handed 310
Helix 4	4	A	141	145	Right-handed 310
Helix 5	5	A	155	159	Right-handed 310
Helix 6	6	A	164	168	Right-handed 310
Helix 7	7	A	237	244	Right-handed alpha
Helix 8	8	A	245	250	Right-handed alpha
Helix 9	9	A	283	293	Right-handed 310
Helix 10	10	A	296	310	Right-handed alpha
Helix 11	11	A	312	319	Right-handed alpha
Helix 12	12	A	372	374	Right-handed 310
Helix 13	13	A	402	404	Right-handed 310
Helix 14	14	B	47	53	Right-handed alpha
Helix 15	15	B	53	58	Right-handed alpha
Helix 16	16	B	69	73	Right-handed 310
Helix 17	17	B	141	145	Right-handed 310
Helix 18	18	B	155	159	Right-handed 310
Helix 19	19	B	164	168	Right-handed 310
Helix 20	20	B	193	196	Right-handed 310
Helix 21	21	B	237	244	Right-handed alpha
Helix 22	22	B	245	250	Right-handed alpha
Helix 23	23	B	283	293	Right-handed 310
Helix 24	24	B	296	310	Right-handed alpha
Helix 25	25	B	312	319	Right-handed alpha
Helix 26	26	B	372	374	Right-handed 310
Helix 27	27	B	402	404	Right-handed 310
Helix 28	28	C	47	52	Right-handed alpha
Helix 29	29	C	53	58	Right-handed alpha
Helix 30	30	C	69	73	Right-handed 310
Helix 31	31	C	122	125	Right-handed 310
Helix 32	32	C	141	145	Right-handed 310
Helix 33	33	C	155	159	Right-handed 310
Helix 34	34	C	164	168	Right-handed 310
Helix 35	35	C	237	245	Right-handed alpha
Helix 36	36	C	246	250	Right-handed 310
Helix 37	37	C	283	293	Right-handed 310
Helix 38	38	C	296	310	Right-handed alpha
Helix 39	39	C	312	319	Right-handed alpha
Helix 40	40	C	372	374	Right-handed 310
Helix 41	41	C	402	404	Right-handed 310
Helix 42	42	D	47	52	Right-handed alpha
Helix 43	43	D	53	58	Right-handed alpha
Helix 44	44	D	69	73	Right-handed 310
Helix 45	45	D	141	145	Right-handed 310
Helix 46	46	D	153	159	Right-handed 310
Helix 47	47	D	164	168	Right-handed 310
Helix 48	48	D	237	244	Right-handed alpha
Helix 49	49	D	245	250	Right-handed 310
Helix 50	50	D	283	293	Right-handed 310
Helix 51	51	D	296	310	Right-handed alpha
Helix 52	52	D	312	319	Right-handed alpha
Helix 53	53	D	372	374	Right-handed 310
Helix 54	54	D	402	404	Right-handed 310

There are 29 sheets in PDB entry 3OM5. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	45	first strand
Strand 2	A	334	343	parallel
Strand 3	A	321	328	anti-parallel
Strand 4	A	266	274	anti-parallel
Strand 5	A	256	263	anti-parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	82	first strand
Strand 2	A	88	90	anti-parallel

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There are 8 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	150	first strand
Strand 2	A	129	136	anti-parallel
Strand 3	A	112	120	anti-parallel
Strand 4	A	92	100	anti-parallel
Strand 5	A	170	178	parallel
Strand 6	A	184	192	anti-parallel
Strand 7	A	198	209	anti-parallel
Strand 8	A	217	228	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	359	first strand
Strand 2	A	362	370	anti-parallel
Strand 3	A	384	391	anti-parallel
Strand 4	A	399	400	anti-parallel

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There are 4 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	359	first strand
Strand 2	A	362	370	anti-parallel
Strand 3	A	384	391	anti-parallel
Strand 4	A	406	410	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	426	first strand
Strand 2	A	433	440	anti-parallel
Strand 3	A	452	453	anti-parallel

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There are 4 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	420	426	first strand
Strand 2	A	433	440	anti-parallel
Strand 3	A	457	462	anti-parallel
Strand 4	A	465	468	anti-parallel

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There are 5 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	342	343	parallel
Strand 3	B	321	328	anti-parallel
Strand 4	B	266	274	anti-parallel
Strand 5	B	256	263	anti-parallel

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There are 4 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	342	343	parallel
Strand 3	B	321	328	anti-parallel
Strand 4	B	334	337	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	82	first strand
Strand 2	B	88	90	anti-parallel

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There are 8 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	150	first strand
Strand 2	B	129	136	anti-parallel
Strand 3	B	112	120	anti-parallel
Strand 4	B	92	100	anti-parallel
Strand 5	B	170	178	parallel
Strand 6	B	184	191	anti-parallel
Strand 7	B	199	212	anti-parallel
Strand 8	B	215	228	anti-parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	359	first strand
Strand 2	B	362	370	anti-parallel
Strand 3	B	384	391	anti-parallel
Strand 4	B	399	400	anti-parallel

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There are 4 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	359	first strand
Strand 2	B	362	370	anti-parallel
Strand 3	B	384	391	anti-parallel
Strand 4	B	406	410	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	426	first strand
Strand 2	B	433	440	anti-parallel
Strand 3	B	452	453	anti-parallel

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There are 4 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	420	426	first strand
Strand 2	B	433	440	anti-parallel
Strand 3	B	457	462	anti-parallel
Strand 4	B	465	468	anti-parallel

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There are 5 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	44	45	first strand
Strand 2	C	334	343	parallel
Strand 3	C	321	328	anti-parallel
Strand 4	C	266	274	anti-parallel
Strand 5	C	256	263	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	82	first strand
Strand 2	C	88	90	anti-parallel

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There are 8 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	150	first strand
Strand 2	C	128	136	anti-parallel
Strand 3	C	112	120	anti-parallel
Strand 4	C	92	100	anti-parallel
Strand 5	C	170	178	parallel
Strand 6	C	184	192	anti-parallel
Strand 7	C	198	212	anti-parallel
Strand 8	C	215	228	anti-parallel

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There are 4 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	359	first strand
Strand 2	C	362	370	anti-parallel
Strand 3	C	384	391	anti-parallel
Strand 4	C	399	400	anti-parallel

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There are 4 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	359	first strand
Strand 2	C	362	370	anti-parallel
Strand 3	C	384	391	anti-parallel
Strand 4	C	406	410	anti-parallel

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There are 3 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	426	first strand
Strand 2	C	433	440	anti-parallel
Strand 3	C	452	453	anti-parallel

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There are 4 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	420	426	first strand
Strand 2	C	433	440	anti-parallel
Strand 3	C	455	462	anti-parallel
Strand 4	C	465	476	anti-parallel

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There are 5 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	45	first strand
Strand 2	D	334	343	parallel
Strand 3	D	321	328	anti-parallel
Strand 4	D	266	274	anti-parallel
Strand 5	D	256	263	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	82	first strand
Strand 2	D	88	90	anti-parallel

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There are 8 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	146	150	first strand
Strand 2	D	129	136	anti-parallel
Strand 3	D	112	120	anti-parallel
Strand 4	D	92	100	anti-parallel
Strand 5	D	170	178	parallel
Strand 6	D	184	192	anti-parallel
Strand 7	D	198	209	anti-parallel
Strand 8	D	217	228	anti-parallel

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There are 4 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	351	359	first strand
Strand 2	D	362	370	anti-parallel
Strand 3	D	384	391	anti-parallel
Strand 4	D	399	400	anti-parallel

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There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	351	359	first strand
Strand 2	D	362	370	anti-parallel
Strand 3	D	384	391	anti-parallel
Strand 4	D	406	410	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	420	426	first strand
Strand 2	D	433	440	anti-parallel
Strand 3	D	452	453	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	420	426	first strand
Strand 2	D	433	440	anti-parallel
Strand 3	D	455	462	anti-parallel
Strand 4	D	465	476	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 3OM5

Analysis of interatomic Contacts of Structural Units in PDB entry:
3OM5