Analysis of interatomic Contacts of Structural Units in PDB entry:
3OM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OM8 entry

There are 2 chains in PDB entry 3OM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1ALA 264
B
 ASN 0ALA 264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 3OM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 43Right-handed 310
Helix 2
2
A
44 50Right-handed alpha
Helix 3
3
A
73 88Right-handed alpha
Helix 4
4
A
99 112Right-handed alpha
Helix 5
5
A
131 144Right-handed alpha
Helix 6
6
A
147 159Right-handed alpha
Helix 7
7
A
160 166Right-handed alpha
Helix 8
8
A
168 180Right-handed alpha
Helix 9
9
A
182 195Right-handed alpha
Helix 10
10
A
201 205Right-handed 310
Helix 11
11
A
221 232Right-handed alpha
Helix 12
12
A
245 250Right-handed alpha
Helix 13
13
A
250 263Right-handed alpha
Helix 14
14
B
37 43Right-handed 310
Helix 15
15
B
44 50Right-handed alpha
Helix 16
16
B
73 89Right-handed alpha
Helix 17
17
B
99 112Right-handed alpha
Helix 18
18
B
131 144Right-handed alpha
Helix 19
19
B
147 159Right-handed alpha
Helix 20
20
B
160 166Right-handed alpha
Helix 21
21
B
168 180Right-handed alpha
Helix 22
22
B
182 195Right-handed alpha
Helix 23
23
B
198 205Right-handed 310
Helix 24
24
B
221 232Right-handed alpha
Helix 25
25
B
245 250Right-handed alpha
Helix 26
26
B
250 263Right-handed alpha
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There are 2 sheets in PDB entry 3OM8. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 8first strand
Strand 2
A
14 20anti-parallel
Strand 3
A
53 57anti-parallel
Strand 4
A
27 31parallel
Strand 5
A
93 98parallel
Strand 6
A
116 122parallel
Strand 7
A
209 214parallel
Strand 8
A
236 240parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 8first strand
Strand 2
B
14 20anti-parallel
Strand 3
B
53 57anti-parallel
Strand 4
B
27 31parallel
Strand 5
B
93 98parallel
Strand 6
B
116 122parallel
Strand 7
B
209 214parallel
Strand 8
B
236 240parallel
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