Analysis of interatomic Contacts of Structural Units in PDB entry:
3OMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OMB entry

There is 1 chain in PDB entry 3OMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 32LYS 534
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 3OMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
53 56Right-handed 310
Helix 2
2
A
57 68Right-handed alpha
Helix 3
3
A
78 92Right-handed alpha
Helix 4
4
A
104 110Right-handed alpha
Helix 5
5
A
116 123Right-handed 310
Helix 6
6
A
124 134Right-handed alpha
Helix 7
7
A
134 142Right-handed alpha
Helix 8
8
A
156 160Right-handed 310
Helix 9
9
A
170 177Right-handed alpha
Helix 10
10
A
183 197Right-handed alpha
Helix 11
11
A
224 233Right-handed 310
Helix 12
12
A
241 245Right-handed 310
Helix 13
13
A
260 276Right-handed alpha
Helix 14
14
A
282 286Right-handed 310
Helix 15
15
A
287 297Right-handed alpha
Helix 16
16
A
311 317Right-handed alpha
Helix 17
17
A
318 321Right-handed 310
Helix 18
18
A
335 339Right-handed 310
Helix 19
19
A
361 373Right-handed alpha
Helix 20
20
A
374 384Right-handed alpha
Helix 21
21
A
401 411Right-handed alpha
Helix 22
22
A
417 421Right-handed 310
Helix 23
23
A
434 452Right-handed alpha
Helix 24
24
A
466 470Right-handed 310
Helix 25
25
A
471 486Right-handed alpha
Helix 26
26
A
488 500Right-handed alpha
Helix 27
27
A
501 516Right-handed alpha
Helix 28
28
A
517 534Right-handed alpha
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There are 4 sheets in PDB entry 3OMB. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 77first strand
Strand 2
A
40 47parallel
Strand 3
A
97 99parallel
Strand 4
A
348 355anti-parallel
Strand 5
A
151 154anti-parallel
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There are 4 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 210first strand
Strand 2
A
304 309parallel
Strand 3
A
165 169anti-parallel
Strand 4
A
323 325anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 250first strand
Strand 2
A
253 256anti-parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
390 394first strand
Strand 2
A
397 400anti-parallel
Strand 3
A
430 432parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il