Analysis of interatomic Contacts of Structural Units in PDB entry:
3OME


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OME entry

There are 6 chains in PDB entry 3OME (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0LEU 249
B
 MET 0LEU 249
C
 GLY -2LEU 249
D
 MET 0LEU 249
E
 MET 0LEU 249
F
 MET 0ASP 89
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 3OME. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 22Right-handed 310
Helix 2
2
A
26 43Right-handed alpha
Helix 3
3
A
75 87Right-handed alpha
Helix 4
4
A
88 97Right-handed alpha
Helix 5
5
A
113 118Right-handed alpha
Helix 6
6
A
134 139Right-handed 310
Helix 7
7
A
147 153Right-handed alpha
Helix 8
8
A
153 164Right-handed alpha
Helix 9
9
A
169 175Right-handed alpha
Helix 10
10
A
183 185Right-handed 310
Helix 11
11
A
186 199Right-handed alpha
Helix 12
12
A
202 221Right-handed alpha
Helix 13
13
A
221 245Right-handed alpha
Helix 14
14
B
18 22Right-handed 310
Helix 15
15
B
26 43Right-handed alpha
Helix 16
16
B
75 87Right-handed alpha
Helix 17
17
B
88 97Right-handed alpha
Helix 18
18
B
113 118Right-handed alpha
Helix 19
19
B
134 139Right-handed 310
Helix 20
20
B
147 153Right-handed alpha
Helix 21
21
B
153 164Right-handed alpha
Helix 22
22
B
169 175Right-handed alpha
Helix 23
23
B
183 185Right-handed 310
Helix 24
24
B
186 199Right-handed alpha
Helix 25
25
B
202 221Right-handed alpha
Helix 26
26
B
221 245Right-handed alpha
Helix 27
27
C
18 22Right-handed 310
Helix 28
28
C
26 43Right-handed alpha
Helix 29
29
C
75 87Right-handed alpha
Helix 30
30
C
88 97Right-handed alpha
Helix 31
31
C
113 118Right-handed alpha
Helix 32
32
C
134 139Right-handed 310
Helix 33
33
C
147 153Right-handed alpha
Helix 34
34
C
153 164Right-handed alpha
Helix 35
35
C
169 175Right-handed alpha
Helix 36
36
C
183 185Right-handed 310
Helix 37
37
C
186 199Right-handed alpha
Helix 38
38
C
202 221Right-handed alpha
Helix 39
39
C
221 245Right-handed alpha
Helix 40
40
D
18 22Right-handed 310
Helix 41
41
D
26 43Right-handed alpha
Helix 42
42
D
75 87Right-handed alpha
Helix 43
43
D
88 97Right-handed alpha
Helix 44
44
D
113 118Right-handed alpha
Helix 45
45
D
134 139Right-handed 310
Helix 46
46
D
147 153Right-handed alpha
Helix 47
47
D
153 164Right-handed alpha
Helix 48
48
D
169 175Right-handed alpha
Helix 49
49
D
183 185Right-handed 310
Helix 50
50
D
186 199Right-handed alpha
Helix 51
51
D
202 221Right-handed alpha
Helix 52
52
D
221 245Right-handed alpha
Helix 53
53
E
18 22Right-handed 310
Helix 54
54
E
26 43Right-handed alpha
Helix 55
55
E
75 87Right-handed alpha
Helix 56
56
E
88 96Right-handed alpha
Helix 57
57
E
112 118Right-handed alpha
Helix 58
58
E
134 139Right-handed 310
Helix 59
59
E
147 153Right-handed alpha
Helix 60
60
E
153 164Right-handed alpha
Helix 61
61
E
169 175Right-handed alpha
Helix 62
62
E
183 185Right-handed 310
Helix 63
63
E
186 199Right-handed alpha
Helix 64
64
E
202 221Right-handed alpha
Helix 65
65
E
221 245Right-handed alpha
Helix 66
66
F
18 22Right-handed 310
Helix 67
67
F
26 43Right-handed alpha
Helix 68
68
F
75 87Right-handed alpha
Helix 69
69
F
88 96Right-handed alpha
Helix 70
70
F
113 118Right-handed alpha
Helix 71
71
F
134 139Right-handed 310
Helix 72
72
F
147 153Right-handed alpha
Helix 73
73
F
153 164Right-handed alpha
Helix 74
74
F
169 175Right-handed alpha
Helix 75
75
F
183 185Right-handed 310
Helix 76
76
F
186 200Right-handed alpha
Helix 77
77
F
202 220Right-handed alpha
Helix 78
78
F
221 245Right-handed alpha
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There are 12 sheets in PDB entry 3OME. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L,

There are 6 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 8first strand
Strand 2
A
11 16anti-parallel
Strand 3
A
48 53parallel
Strand 4
A
101 105parallel
Strand 5
A
122 126parallel
Strand 6
A
180 182parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
108 110first strand
Strand 2
A
130 132parallel
Strand 3
A
166 168anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 8first strand
Strand 2
B
11 16anti-parallel
Strand 3
B
48 53parallel
Strand 4
B
101 105parallel
Strand 5
B
122 126parallel
Strand 6
B
180 182parallel
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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
108 110first strand
Strand 2
B
130 132parallel
Strand 3
B
167 168anti-parallel
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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 8first strand
Strand 2
C
11 16anti-parallel
Strand 3
C
48 53parallel
Strand 4
C
101 105parallel
Strand 5
C
122 126parallel
Strand 6
C
180 182parallel
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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
108 110first strand
Strand 2
C
130 132parallel
Strand 3
C
167 168anti-parallel
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There are 6 strands in G sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
3 8first strand
Strand 2
D
11 16anti-parallel
Strand 3
D
48 53parallel
Strand 4
D
101 105parallel
Strand 5
D
122 126parallel
Strand 6
D
180 182parallel
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There are 3 strands in H sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
108 110first strand
Strand 2
D
130 132parallel
Strand 3
D
167 168anti-parallel
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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
3 8first strand
Strand 2
E
11 16anti-parallel
Strand 3
E
48 53parallel
Strand 4
E
101 105parallel
Strand 5
E
122 126parallel
Strand 6
E
180 182parallel
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There are 3 strands in J sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
108 110first strand
Strand 2
E
130 132parallel
Strand 3
E
167 168anti-parallel
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There are 6 strands in K sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3 8first strand
Strand 2
F
11 16anti-parallel
Strand 3
F
48 53parallel
Strand 4
F
101 105parallel
Strand 5
F
122 126parallel
Strand 6
F
180 182parallel
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There are 3 strands in L sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
108 110first strand
Strand 2
F
130 132parallel
Strand 3
F
167 168anti-parallel
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