Analysis of interatomic Contacts of Structural Units in PDB entry:
3OMU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OMU entry

There are 2 chains in PDB entry 3OMU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1VAL 208
B
 MET 2MET 207
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3OMU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
9 22Right-handed alpha
Helix 2
2
A
28 52Right-handed alpha
Helix 3
3
A
85 94Right-handed alpha
Helix 4
4
A
96 110Right-handed alpha
Helix 5
5
A
113 121Right-handed 310
Helix 6
6
A
122 129Right-handed 310
Helix 7
7
A
178 184Right-handed 310
Helix 8
8
A
185 198Right-handed alpha
Helix 9
9
B
9 22Right-handed alpha
Helix 10
10
B
28 52Right-handed alpha
Helix 11
11
B
53 57Right-handed 310
Helix 12
12
B
85 94Right-handed alpha
Helix 13
13
B
96 109Right-handed alpha
Helix 14
14
B
113 121Right-handed 310
Helix 15
15
B
122 129Right-handed 310
Helix 16
16
B
180 184Right-handed 310
Helix 17
17
B
185 195Right-handed alpha
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There are 2 sheets in PDB entry 3OMU. Click on sheet of interest to get list of strands forming it: A, B,

There are 8 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
155 160anti-parallel
Strand 3
A
146 150anti-parallel
Strand 4
A
131 139anti-parallel
Strand 5
A
169 176anti-parallel
Strand 6
A
74 79anti-parallel
Strand 7
A
63 69anti-parallel
Strand 8
A
203 206parallel
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There are 8 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 7first strand
Strand 2
B
155 160anti-parallel
Strand 3
B
146 149anti-parallel
Strand 4
B
131 139anti-parallel
Strand 5
B
169 176anti-parallel
Strand 6
B
74 79anti-parallel
Strand 7
B
63 69anti-parallel
Strand 8
B
203 206parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il