Analysis of interatomic Contacts of Structural Units in PDB entry:
3OMV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 3OMV entry

There are 2 chains in PDB entry 3OMV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 340LYS 615
B
 TYR 340LYS 615
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 3OMV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
383 398Right-handed alpha
Helix 2
2
A
428 435Right-handed alpha
Helix 3
3
A
441 462Right-handed alpha
Helix 4
4
A
513 519Right-handed alpha
Helix 5
5
A
526 544Right-handed alpha
Helix 6
6
A
553 563Right-handed alpha
Helix 7
7
A
578 589Right-handed alpha
Helix 8
8
A
598 611Right-handed alpha
Helix 9
9
B
383 398Right-handed alpha
Helix 10
10
B
428 435Right-handed alpha
Helix 11
11
B
441 462Right-handed alpha
Helix 12
12
B
513 519Right-handed alpha
Helix 13
13
B
526 544Right-handed alpha
Helix 14
14
B
553 562Right-handed alpha
Helix 15
15
B
578 590Right-handed alpha
Helix 16
16
B
598 607Right-handed alpha
Helix 17
17
B
608 613Right-handed alpha
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There are 4 sheets in PDB entry 3OMV. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 354first strand
Strand 2
A
362 367anti-parallel
Strand 3
A
371 376anti-parallel
Strand 4
A
418 422anti-parallel
Strand 5
A
408 412anti-parallel
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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
474 477first strand
Strand 2
A
480 484anti-parallel
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There are 5 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
354 357first strand
Strand 2
B
362 367anti-parallel
Strand 3
B
371 376anti-parallel
Strand 4
B
418 422anti-parallel
Strand 5
B
408 412anti-parallel
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There are 2 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
474 477first strand
Strand 2
B
481 484anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il